Evidence map›Paper›PMID 29563567›Full record

ArticleScientific reports2018

The effects of promoter variations of the N-Methylcanadine 1-Hydroxylase (CYP82Y1) gene on the noscapine production in opium poppy.

Davar Abedini, Sajad Rashidi Monfared, Alireza Abbasi

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The effects of water deficit on the expression of monoterpene synthases and essential oils composition inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020
    Article
  5. Article
  6. Transcriptome Profiling of Two Ornamental and MedicinalInternational journal of molecular sciences · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Davar AbediniDepartment of Biotechnology, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran.
Sajad Rashidi MonfaredDepartment of Biotechnology, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran. rashidims@modares.ac.ir.
Alireza AbbasiDepartment of Agronomy and Plant Breeding, University of Tehran, Karaj, Iran.
Tarbiat Modares University · IRUniversity of Tehran · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Noscapine is an antitumor alkaloid produced in opium poppy (Papaver somniferum) and some members of the Papaveraceae family. It has been primarily used for its antitussive effects; more recently, its anticancer properties were shown. Herein, we detected an SSR embedded in the promoter region of the CYP82Y1 gene, which was found to be the first committed-step enzyme in the noscapine biosynthesis pathway, using the MISA program. Some collected ecotypes of P. somniferum were investigated for understanding of SSRs role in the regulation of gene expression and metabolite content. Quantitative PCR showed that a variation in the motif repeat number (either a decrease or increase) down-regulated the expression of the CYP82Y1 gene. Furthermore, the analysis of noscapine content suggested that a variation in the promoter region influence noscapine amount. Moreover, P. bracteatum was analyzed in both transcript and metabolite levels, and illustrated much less expression and metabolite level in comparison to P. somniferum. By exploiting the transcriptome data from the eight genera of the Papaveraceae family, we found that noscapine biosynthesis genes are present in P. bracteatum and are not shared in other genera of the Papaveraceae family. This results may explain production of a confined metabolite within a genus.

Indexed as

Alcohol OxidoreductasesBiosynthetic PathwaysComputer SimulationCytochrome P-450 Enzyme SystemDown-RegulationGene Expression ProfilingGene Expression Regulation, PlantMethyltransferasesMicrosatellite RepeatsNoscapinePapaverPlant ProteinsPromoter Regions, GeneticAlcohol OxidoreductasesCytochrome P-450 Enzyme SystemMethyltransferasesNoscapinePlant Proteins

Identifiers

PMID29563567
PMCPMC5862900
OpenAlexW2806250458

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.