Evidence mapPaperPMID 29616505Full record

ArticleJournal of Zhejiang University. Science. B

Network analysis of microRNAs, transcription factors, and target genes involved in axon regeneration.

Li-Ning Su, Xiao-Qing Song, Zhan-Xia Xue, Chen-Qing Zheng, Hai-Feng Yin, Hui-Ping Wei

Abstract read
In one paragraph

Article in Journal of Zhejiang University. Science. B. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  7. Tumor-associated genetic amplifications impact extracellular vesicle miRNA cargo and their recruitment of nerves in head and neck cancer.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
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  15. Expression and Role of TRIM2 in Human Diseases.BioMed research international · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Li-Ning SuDepartment of Basic Medicine, Hebei North University, Zhangjiakou 075029, China.
Xiao-Qing SongDepartment of Basic Medicine, Hebei North University, Zhangjiakou 075029, China.
Zhan-Xia XueDepartment of Pharmacy, Hebei North University, Zhangjiakou 075029, China.
Chen-Qing ZhengShenzhen RealOmics (Biotech) Co., Ltd., Shenzhen 518081, China.
Hai-Feng YinDepartment of Basic Medicine, Hebei North University, Zhangjiakou 075029, China.
Hui-Ping WeiDepartment of Basic Medicine, Hebei North University, Zhangjiakou 075029, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Axon regeneration is crucial for recovery from neurological diseases. Numerous studies have identified several genes, microRNAs (miRNAs), and transcription factors (TFs) that influence axon regeneration. However, the regulatory networks involved have not been fully elucidated. In the present study, we analyzed a regulatory network of 51 miRNAs, 27 TFs, and 59 target genes, which is involved in axon regeneration. We identified 359 pairs of feed-forward loops (FFLs), seven important genes (Nap1l1, Arhgef12, Sema6d, Akt3, Trim2, Rab11fip2, and Rps6ka3), six important miRNAs (hsa-miR-204-5p, hsa-miR-124-3p, hsa-miR-26a-5p, hsa-miR-16-5p, hsa-miR-17-5p, and hsa-miR-15b-5p), and eight important TFs (Smada2, Fli1, Wt1, Sp6, Sp3, Smad4, Smad5, and Creb1), which appear to play an important role in axon regeneration. Functional enrichment analysis revealed that axon-associated genes are involved mainly in the regulation of cellular component organization, axonogenesis, and cell morphogenesis during neuronal differentiation. However, these findings need to be validated by further studies.

Indexed as

Gene Regulatory NetworksNerve RegenerationAxonsCell DifferentiationCluster AnalysisEmbryonic Stem CellsGene Expression ProfilingGene Expression RegulationHumansMicroRNAsNeuronsSoftwareTranscription FactorsMicroRNAsTranscription FactorsTranscription factors; miRNAs; Target genes; Axon; Network analysis

Identifiers

PMID29616505
PMCPMC5964340

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.