Evidence map›Paper›PMID 29635409›Full record

ArticleGigaScience2018

Whole-genome resequencing reveals signatures of selection and timing of duck domestication.

Zebin Zhang, Yaxiong Jia, Pedro Almeida, Judith E Mank, Marcel van Tuinen, Qiong Wang, Zhihua Jiang, Yu Chen, Kai Zhan, Shuisheng Hou and 7 more

Abstract read
In one paragraph

Article in GigaScience, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed.

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  7. Archaeogenomic insights into commensalism and regional variation in pig management in Neolithic northwest Europe.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  11. Repeated global adaptation across plant species.Proceedings of the National Academy of Sciences of the United States of America · 2024
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6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Zebin ZhangState Key Laboratory of Animal Nutrition, Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, China.
Yaxiong JiaInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China.
Pedro AlmeidaDepartment of Genetics, Evolution and Environment, University College London, London, UK.
Judith E MankDepartment of Genetics, Evolution and Environment, University College London, London, UK.
Marcel van TuinenCentre of Evolutionary and Ecological Studies, Marine Evolution and Conservation Group, University of Groningen, Groningen, The Netherlands.
Qiong WangState Key Laboratory of Animal Nutrition, Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, China.
Zhihua JiangDepartment of Animal Sciences, Center for Reproductive Biology, Veterinary and Biomedical Research Building, Washington State University, Pullman, United States.
Yu ChenBeijing Municipal General Station of Animal Science, Beijing, China.
Kai ZhanInstitute of Animal Husbandry and Veterinary Medicine, Anhui Academy of Agricultural Sciences, Hefei, China.
Shuisheng HouInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China.
Zhengkui ZhouInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China.
Huifang LiPoultry Institute, Chinese Academy of Agriculture Science, Yangzhou, China.
Fangxi YangInstitute of Pekin Duck, Beijing, China.
Yong HeCherry Valley farms (xianghe) Co., Ltd, Langfang, China.
Zhonghua NingState Key Laboratory of Animal Nutrition, Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, China.
Ning YangState Key Laboratory of Animal Nutrition, Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, China.
Lujiang QuState Key Laboratory of Animal Nutrition, Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, China.

Funding

European Research Council 680951
6 · The paper itself

Abstract

Background: The genetic basis of animal domestication remains poorly understood, and systems with substantial phenotypic differences between wild and domestic populations are useful for elucidating the genetic basis of adaptation to new environments as well as the genetic basis of rapid phenotypic change. Here, we sequenced the whole genome of 78 individual ducks, from two wild and seven domesticated populations, with an average sequencing depth of 6.42X per individual. Results: Our population and demographic analyses indicate a complex history of domestication, with early selection for separate meat and egg lineages. Genomic comparison of wild to domesticated populations suggests that genes that affect brain and neuronal development have undergone strong positive selection during domestication. Our FST analysis also indicates that the duck white plumage is the result of selection at the melanogenesis-associated transcription factor locus. Conclusions: Our results advance the understanding of animal domestication and selection for complex phenotypic traits.

Indexed as

DomesticationAnimalsDucksGenetic VariationMaleSelection, GeneticWhole Genome Sequencing

Identifiers

PMID29635409
PMCPMC6007426

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.