Evidence map›Paper›PMID 29671580›Full record

ArticleAnalytical chemistry2018

Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and α-1B-Glycoprotein.

Shisheng Sun, Yingwei Hu, Li Jia, Shadi Toghi Eshghi, Yang Liu, Punit Shah, Hui Zhang

Abstract read
In one paragraph

Article in Analytical chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Mass spectrometry-based structure-specificActa biochimica et biophysica Sinica · 2024
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. L-Fucose treatment of FUT8-CDG.Molecular genetics and metabolism reports · 2020
    Article
  13. Article
  14. Quantitative Longitudinal Inventory of theJournal of proteome research · 2020
    Article
  15. Article
  16. Article
  17. Heterogeneities of Site-SpecificFrontiers in oncology · 2020
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Shisheng SunCollege of Life Science , Northwest University , Xi'an , Shaanxi Province 710069 , China.ORCID 0000-0002-7242-7164
Yingwei HuDepartment of Pathology , Johns Hopkins University , Baltimore , Maryland 21287 , United States.ORCID 0000-0002-4629-0985
Li JiaCollege of Life Science , Northwest University , Xi'an , Shaanxi Province 710069 , China.
Shadi Toghi EshghiDepartment of Pathology , Johns Hopkins University , Baltimore , Maryland 21287 , United States.
Yang LiuDepartment of Pathology , Johns Hopkins University , Baltimore , Maryland 21287 , United States.
Punit ShahDepartment of Pathology , Johns Hopkins University , Baltimore , Maryland 21287 , United States.
Hui ZhangDepartment of Pathology , Johns Hopkins University , Baltimore , Maryland 21287 , United States.ORCID 0000-0001-8726-7098
Johns Hopkins University · USNorthwest University · CN

Funding

Shared Resource CoresP01HL107153 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI ZHANG, HUI · 2011 to 2017
$16.8M
Glycoprotein biomarkers for the early detection of aggressive prostate cancerU01CA152813 · NCI · JOHNS HOPKINS UNIVERSITY · PI ZHANG, HUI · 2010 to 2021
$6.2M
The Comprehensive Proteome Characterization Center at Johns Hopkins: High Precision Discovery and Confirmation of Genoproteomic TargetsU24CA210985 · NCI · JOHNS HOPKINS UNIVERSITY · PI CHAN, DANIEL WANYUI, ZHANG, HUI · 2016 to 2020
$5.3M
Targeting Latently Infected Primary Cells using Integrated GlycoproteomicsR21AI122382 · NIAID · JOHNS HOPKINS UNIVERSITY · PI ZHANG, HUI · 2016 to 2017
$446k
NCI NIH HHS U01 CA152813NCI NIH HHS U24 CA210985NHLBI NIH HHS P01 HL107153NIAID NIH HHS R21 AI122382
6 · The paper itself

Abstract

Most serum proteins are N-linked glycosylated, and therefore the glycoproteomic profiling of serum is essential for characterization of serum proteins. In this study, we profiled serum N-glycoproteome by our recently developed N-glycoproteomic method using solid-phase extraction of N-linked glycans and glycosite-containing peptides (NGAG) coupled with LC-MS/MS and site-specific glycosylation analysis using GPQuest software. Our data indicated that half of identified N-glycosites were modified by at least two glycans, with a majority of them being sialylated. Specifically, 3/4 of glycosites were modified by biantennary N-glycans and 1/3 of glycosites were modified by triantennary sialylated N-glycans. In addition, two novel atypical glycosites (with N-X-V motif) were identified and validated from albumin and α-1B-glycoprotein. The widespread presence of these two glycosites among individuals was further confirmed by individual serum analyses.

Indexed as

AlbuminsGlycoproteinsGlycosylationHumansPeptidesPolysaccharidesAlbuminsGlycoproteinsPeptidesPolysaccharides

Identifiers

PMID29671580
PMCPMC6467210
OpenAlexW2800723493

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.