Evidence map›Paper›PMID 29733633›Full record

ArticleJournal of chemical theory and computation2018

Membrane-Induced p K

Diogo Vila-Viçosa, Tomás F D Silva, Gregory Slaybaugh, Yana K Reshetnyak, Oleg A Andreev, Miguel Machuqueiro

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Review
  2. Improving the Estimation of pThe journal of physical chemistry. B · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Arginine Residues Modulate the Membrane Interactions of pHLIP Peptides.Journal of chemical information and modeling · 2023
    Article
  7. Article
  8. Review
  9. Increasing the Realism ofJournal of chemical theory and computation · 2022
    Article
  10. CaProtein science : a publication of the Protein Society · 2022
    Article
  11. Optimization of anJournal of chemical information and modeling · 2022
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. pKMethods in molecular biology (Clifton, N.J.) · 2021
    Article
  17. Article
  18. Kinetics of pHLIP peptide insertion into and exit from a membrane.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Diogo Vila-ViçosaCentro de Química e Bioquímica, BioISI: Biosystems and Integrative Sciences Institute, Departamento de Química e Bioquímica, Faculdade de Ciências , Universidade de Lisboa , 1749-016 Lisboa , Portugal.
Tomás F D SilvaCentro de Química e Bioquímica, BioISI: Biosystems and Integrative Sciences Institute, Departamento de Química e Bioquímica, Faculdade de Ciências , Universidade de Lisboa , 1749-016 Lisboa , Portugal.
Gregory SlaybaughDepartment of Physics , University of Rhode Island , 2 Lippitt Road , Kingston , Rhode Island 02881 , United States.
Yana K ReshetnyakDepartment of Physics , University of Rhode Island , 2 Lippitt Road , Kingston , Rhode Island 02881 , United States.
Oleg A AndreevDepartment of Physics , University of Rhode Island , 2 Lippitt Road , Kingston , Rhode Island 02881 , United States.
Miguel MachuqueiroCentro de Química e Bioquímica, BioISI: Biosystems and Integrative Sciences Institute, Departamento de Química e Bioquímica, Faculdade de Ciências , Universidade de Lisboa , 1749-016 Lisboa , Portugal.ORCID http://orcid.org/0000-0001-6923-8744

Funding

TM INTERACTIONS IN MEMBRANE PROTEIN FOLDING AND FUNCTIONR01GM073857 · NIGMS · YALE UNIVERSITY · PI ANDREEV, OLEG A, ENGELMAN, DONALD M. · 2006 to 2023
$8.4M
NIGMS NIH HHS R01 GM073857
6 · The paper itself

Abstract

The pH (low) insertion peptides (pHLIPs) is a family of peptides that are able to insert into a lipid bilayer at acidic pH. The molecular mechanism of pHLIPs insertion, folding, and stability in the membrane at low pH is based on multiple protonation events, which are challenging to study at the molecular level. More specifically, the relation between the experimental p K of insertion (p K

Indexed as

Circular DichroismHumansHydrogen-Ion ConcentrationKineticsLipid BilayersLiposomesMembrane ProteinsMolecular Dynamics SimulationMutagenesis, Site-DirectedProtein Structure, SecondaryThermodynamicsLipid BilayersLiposomesMembrane ProteinspHLIP protein

Identifiers

PMID29733633
PMCPMC6287259

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.