Evidence map›Paper›PMID 29866042›Full record

ArticleBMC genomics2018

Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes.

Mari H Tervaniemi, Shintaro Katayama, Tiina Skoog, H Annika Siitonen, Jyrki Vuola, Kristo Nuutila, Kristiina Tammimies, Sari Suomela, Esko Kankuri, Juha Kere and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Trial
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  12. Genetic Associations with Coronavirus Susceptibility and Disease Severity.Advances in experimental medicine and biology · 2023
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Analysis of Glucocorticoid-Related Genes RevealJournal of the Endocrine Society · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 4 countries.

Mari H TervaniemiFolkhälsan Institute of Genetics, 00014, Helsinki, Finland.
Shintaro KatayamaDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.
Tiina SkoogDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.
H Annika SiitonenFolkhälsan Institute of Genetics, 00014, Helsinki, Finland.
Jyrki VuolaHelsinki Burn Center, Department of Plastic Surgery, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.
Kristo NuutilaDepartment of Pharmacology, Medicum, University of Helsinki, Helsinki, Finland.
Kristiina TammimiesDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.
Sari SuomelaDepartment of Dermatology, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.
Esko KankuriDepartment of Pharmacology, Medicum, University of Helsinki, Helsinki, Finland.
Juha KereFolkhälsan Institute of Genetics, 00014, Helsinki, Finland. juha.kere@ki.se.
Outi ElomaaFolkhälsan Institute of Genetics, 00014, Helsinki, Finland. outi.elomaa@helsinki.fi.ORCID http://orcid.org/0000-0002-0646-4979
University of Helsinki · FIKarolinska Institutet · SE

Funding

Academy of Finland 130360, 1255560
6 · The paper itself

Abstract

backgroundCCHCR1 (Coiled-Coil α-Helical Rod protein 1) is a putative psoriasis candidate gene with the risk alleles CCHCR1*WWCC and *Iso3, the latter inhibiting the translation of isoform 1. CCHCR1 was recently shown to be a centrosomal protein, as well as a component of cytoplasmic processing bodies (P-bodies) that regulate mRNA turnover. The function of CCHCR1 has remained unsettled, partly because of the inconsistent findings; it has been shown to play a wide variety of roles in divergent processes, e.g., cell proliferation and steroidogenesis. Here we utilized RNA sequencing (RNAseq) using HEK293 cells overexpressing isoforms 1 or 3 (Iso1, Iso3 cells), in combination with the coding non-risk or risk (*WWCC) haplotype of CCHCR1. Our aim was to study the overall role of CCHCR1 and the effects of its variants.

resultsThe overexpression of CCHCR1 variants in HEK293 cells resulted in cell line-specific expression profiles though several similarities were observable. Overall the Iso1 and Iso3 cells showed a clear isoform-specific clustering as two separate groups, and the Non-risk and Risk cells often exhibited opposite effects. The RNAseq supported a role for CCHCR1 in the centrosomes and P-bodies; the most highlighted pathways included regulation of cytoskeleton, adherens and tight junctions, mRNA surveillance and RNA transport. Interestingly, both the RNAseq and immunofluorescent localization revealed variant-specific differences for CCHCR1 within the P-bodies.

conclusionsCCHCR1 influenced a wide variety of signaling pathways, which could reflect its active role in the P-bodies and centrosomes that both are linked to the cytoskeleton; as a centrosomal P-body protein CCHCR1 may regulate diverse cytoskeleton-mediated functions, such as cell adhesion and -division. The present findings may explain the previous inconsistent observations about the functions of CCHCR1.

Indexed as

Gene Expression RegulationSignal TransductionCell AdhesionCentrosomeCytoskeletonHaplotypesHEK293 CellsHumansIntracellular Signaling Peptides and ProteinsIntracellular SpacePsoriasisSkinCCHCR1 protein, humanIntracellular Signaling Peptides and ProteinsCCHCR1Cell adhesionCentrosomeCytoskeletonExpression profilingP-bodyPSORS1RNAseq

Identifiers

PMID29866042
PMCPMC5987482
OpenAlexW2806127603

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.