Evidence map›Paper›PMID 29899338›Full record

ArticleNature communications2018

Helicase promotes replication re-initiation from an RNA transcript.

Bo Sun, Anupam Singh, Shemaila Sultana, James T Inman, Smita S Patel, Michelle D Wang

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. DNA Polymerase Locks Replication Fork Under Stress.bioRxiv : the preprint server for biology · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Optical tweezers in single-molecule biophysics.Nature reviews. Methods primers · 2021
    Article
  10. Review
  11. Article
  12. Review
  13. Towards biological applications of nanophotonic tweezers.Current opinion in chemical biology · 2019
    Review
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Bo SunHoward Hughes Medical Institute, Cornell University, Ithaca, NY, 14853, USA. sunbo@shanghaitech.edu.cn.ORCID http://orcid.org/0000-0002-4590-7795
Anupam SinghDepartment of Biochemistry & Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ, 08854, USA.
Shemaila SultanaDepartment of Biochemistry & Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ, 08854, USA.
James T InmanHoward Hughes Medical Institute, Cornell University, Ithaca, NY, 14853, USA.
Smita S PatelDepartment of Biochemistry & Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ, 08854, USA.
Michelle D WangHoward Hughes Medical Institute, Cornell University, Ithaca, NY, 14853, USA. mwang@physics.cornell.edu.ORCID http://orcid.org/0000-0001-9137-3790
Howard Hughes Medical Institute · USRutgers, The State University of New Jersey · US

Funding

Mechanistic studies of nucleic acid enzymes involved in DNA replication, transcription, and innate immunity.R35GM118086 · NIGMS · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI SMITA S PATEL · 2016 to 2026
$8.9M
NIGMS NIH HHS R35 GM118086
6 · The paper itself

Abstract

To ensure accurate DNA replication, a replisome must effectively overcome numerous obstacles on its DNA substrate. After encountering an obstacle, a progressing replisome often aborts DNA synthesis but continues to unwind. However, little is known about how DNA synthesis is resumed downstream of an obstacle. Here, we examine the consequences of a non-replicating replisome collision with a co-directional RNA polymerase (RNAP). Using single-molecule and ensemble methods, we find that T7 helicase interacts strongly with a non-replicating T7 DNA polymerase (DNAP) at a replication fork. As the helicase advances, the associated DNAP also moves forward. The presence of the DNAP increases both helicase's processivity and unwinding rate. We show that such a DNAP, together with its helicase, is indeed able to actively disrupt a stalled transcription elongation complex, and then initiates replication using the RNA transcript as a primer. These observations exhibit T7 helicase's novel role in replication re-initiation.

Indexed as

Bacteriophage T7DNA-Directed DNA PolymeraseDNA-Directed RNA PolymerasesDNA HelicasesDNA ReplicationDNA, ViralEscherichia coliModels, BiologicalRNA, ViralTranscription, GeneticDNA-Directed DNA PolymeraseDNA-Directed RNA PolymerasesDNA HelicasesDNA, ViralRNA, Viral

Identifiers

PMID29899338
PMCPMC5997990
OpenAlexW2798942830

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.