Evidence map›Paper›PMID 29902117›Full record

ArticleRNA biology2018

NRDE-2, the human homolog of fission yeast Nrl1, prevents DNA damage accumulation in human cells.

Patricia Richard, Koichi Ogami, Yaqiong Chen, Shuang Feng, James J Moresco, John R Yates, James L Manley

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Patricia Richarda Department of Biological Sciences , Columbia University , New York , NY , USA.ORCID 0000-0002-9515-4509
Koichi Ogamia Department of Biological Sciences , Columbia University , New York , NY , USA.ORCID 0000-0001-9380-9666
Yaqiong Chena Department of Biological Sciences , Columbia University , New York , NY , USA.
Shuang Fenga Department of Biological Sciences , Columbia University , New York , NY , USA.
James J Morescoc Department of Molecular Medicine , The Scripps Research Institute , La Jolla , CA , USA.
John R Yatesc Department of Molecular Medicine , The Scripps Research Institute , La Jolla , CA , USA.
James L Manleya Department of Biological Sciences , Columbia University , New York , NY , USA.
Columbia University · USScripps Research Institute · USNagoya City University · JP

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI DAVIS, TRISHA N. · 2012 to 2021
$20.7M
Regulation of RNA processing: Mechanisms and ConsequencesR35GM118136 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI James L. Manley · 2016 to 2026
$8.9M
NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R35 GM118136NIH HHS P41 GM 103533NIH HHS R35 GM 118136
6 · The paper itself

Abstract

The RNA helicase Mtr4 is a versatile protein that is a crucial component of several distinct RNA surveillance complexes. Here we describe a novel complex that contains Mtr4, but has a role distinct from any of those previously described. We found that Mtr4 association with the human homolog of fission yeast Nrl1, NRDE-2, defines a novel function for Mtr4 in the DNA damage response pathway. We provide biochemical evidence that Mtr4 and NRDE-2 are part of the same complex and show that both proteins play a role in the DNA damage response by maintaining low DNA double-strand break levels. Importantly, the DNA damage response function of the Mtr4/NRDE-2 complex does not depend on the formation of R loops. We show however that NRDE-2 and Mtr4 can affect R-loop signals at a subset of distinct genes, possibly regulating their expression. Our work not only expands the wide range of Mtr4 functions, but also elucidates an important role of the less characterized human NRDE-2 protein.

Indexed as

DNA Breaks, Double-StrandedGene Expression RegulationGene Knockdown TechniquesHEK293 CellsHeLa CellsHumansMolecular StructureOligopeptidesRNA-Binding ProteinsRNA HelicasesRNA, Small InterferingSchizosaccharomycesSchizosaccharomyces pombe ProteinsFLAG peptideMTREX protein, humanNrl1 protein, S pombeOligopeptidesRNA-Binding ProteinsRNA HelicasesRNA, Small InterferingSchizosaccharomyces pombe ProteinsDDRDNA damagedouble-strand breaksDSBslncRNAs; NRDE2Mtr4NRDE-2Nrl1R loopR-loop

Identifiers

PMID29902117
PMCPMC6161687
OpenAlexW2808166739

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.