Evidence map›Paper›PMID 29926116›Full record

ArticleDiabetologia2018

Identification of novel high-impact recessively inherited type 2 diabetes risk variants in the Greenlandic population.

Niels Grarup, Ida Moltke, Mette K Andersen, Peter Bjerregaard, Christina V L Larsen, Inger K Dahl-Petersen, Emil Jørsboe, Hemant K Tiwari, Scarlett E Hopkins, Howard W Wiener and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Diabetologia, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. A novel splice-affectingThe Lancet regional health. Europe · 2023
    Article
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  10. Royal Society open science · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

Niels GrarupNovo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200, Copenhagen, Denmark.ORCID 0000-0001-5526-1070
Ida MoltkeThe Bioinformatics Centre, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark.
Mette K AndersenNovo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200, Copenhagen, Denmark.
Peter BjerregaardNational Institute of Public Health, University of Southern Denmark, Copenhagen, Denmark.
Christina V L LarsenNational Institute of Public Health, University of Southern Denmark, Copenhagen, Denmark.
Inger K Dahl-PetersenNational Institute of Public Health, University of Southern Denmark, Copenhagen, Denmark.
Emil JørsboeThe Bioinformatics Centre, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark.
Hemant K TiwariDepartment of Biostatistics, School of Public Health, University of Alabama at Birmingham, Birmingham, AL, USA.
Scarlett E HopkinsCenter for Alaska Native Health Research, University of Alaska Fairbanks, Fairbanks, AK, USA.
Howard W WienerDepartment of Epidemiology, School of Public Health, University of Alabama at Birmingham, Birmingham, AL, USA.
Bert B BoyerCenter for Alaska Native Health Research, University of Alaska Fairbanks, Fairbanks, AK, USA.
Allan LinnebergCenter for Clinical Research and Prevention, Bispebjerg and Frederiksberg Hospital, The Capital Region, Copenhagen, Denmark.
Oluf PedersenNovo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200, Copenhagen, Denmark.
Marit E JørgensenNational Institute of Public Health, University of Southern Denmark, Copenhagen, Denmark.
Anders AlbrechtsenThe Bioinformatics Centre, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark. albrecht@binf.ku.dk.
Torben HansenNovo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200, Copenhagen, Denmark. torben.hansen@sund.ku.dk.
University of Copenhagen · DKIlisimatusarfik · GLUniversity of Alabama at Birmingham · USUniversity of Alaska Fairbanks · USUniversity of Southern Denmark · DKSteno Diabetes Centers · DK

Funding

University of Alabama at Birmingham's Diabetes Research CenterP30DK079626 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Stuart J Frank · 2013 to 2026
$19.5M
Pilot Project ProgramP30GM103325 · NIGMS · UNIVERSITY OF ALASKA FAIRBANKS · PI O'BRIEN, DIANE MARIE · 2012 to 2016
$5.3M
Genetics of Obesity in Yup'ik EskimosR01DK074842 · NIDDK · UNIVERSITY OF ALASKA FAIRBANKS · PI BOYER, BERT BRANDON · 2007 to 2011
$2.8M
EPIGENOME MODIFICATION BY A DIETARY PATTERN RICH IN POLYUNSATURATED FATTY ACIDSR01DK104347 · NIDDK · UNIVERSITY OF ALASKA FAIRBANKS · PI ABSHER, DEVIN MICHAEL, BOYER, BERT BRANDON · 2016 to 2019
$2.5M
Epigenome modification by a dietary pattern rich in polyunsaturated fatty acidsR01DK112358 · NIDDK · UNIVERSITY OF ALASKA FAIRBANKS · PI ABSHER, DEVIN MICHAEL, BOYER, BERT BRANDON · 2017 to 2020
$575k
NIDDK NIH HHS P30 DK079626NIDDK NIH HHS R01 DK074842NIDDK NIH HHS R01 DK104347NIDDK NIH HHS R01 DK112358NIGMS NIH HHS P30 GM103325
6 · The paper itself

Abstract

aims/hypothesisIn a recent study using a standard additive genetic model, we identified a TBC1D4 loss-of-function variant with a large recessive impact on risk of type 2 diabetes in Greenlanders. The aim of the current study was to identify additional genetic variation underlying type 2 diabetes using a recessive genetic model, thereby increasing the power to detect variants with recessive effects.

methodsWe investigated three cohorts of Greenlanders (B99, n = 1401; IHIT, n = 3115; and BBH, n = 547), which were genotyped using Illumina MetaboChip. Of the 4674 genotyped individuals passing quality control, 4648 had phenotype data available, and type 2 diabetes association analyses were performed for 317 individuals with type 2 diabetes and 2631 participants with normal glucose tolerance. Statistical association analyses were performed using a linear mixed model.

resultsUsing a recessive genetic model, we identified two novel loci associated with type 2 diabetes in Greenlanders, namely rs870992 in ITGA1 on chromosome 5 (OR 2.79, p = 1.8 × 10 CONCLUSIONS/

interpretationWe demonstrate the value of using a recessive genetic model in a historically small and isolated population to identify genetic risk variants. Our findings give new insights into the genetic architecture of type 2 diabetes, and further support the existence of high-effect genetic risk factors of potential clinical relevance, particularly in isolated populations. DATA AVAILABILITY: The Greenlandic MetaboChip-genotype data are available at European Genome-Phenome Archive (EGA; https://ega-archive.org/ ) under the accession EGAS00001002641.

Indexed as

Chromosomes, Human, Pair 22Chromosomes, Human, Pair 5Diabetes Mellitus, Type 2FemaleGene FrequencyGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeGreenlandHumansMaleN-AcetylglucosaminyltransferasesPolymorphism, Single NucleotideLARGE1 protein, humanN-AcetylglucosaminyltransferasesGenetic associationGenome-wide association studyGreenlandersInuitITGA1LARGE1Recessive genetic modelType 2 diabetes

Identifiers

PMID29926116
PMCPMC6096637
OpenAlexW2808790754

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.