Evidence map›Paper›PMID 29946990›Full record

ReviewJournal of applied genetics2018

Genome-wide association study of body weight in Wenshang Barred chicken based on the SLAF-seq technology.

Fuwei Li, Haixia Han, Qiuxia Lei, Jinbo Gao, Jie Liu, Wei Liu, Yan Zhou, Huimin Li, Dingguo Cao

Abstract readReview
PubMed Publisher
In one paragraph

Review in Journal of applied genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  5. Fourth Report on Chicken Genes and Chromosomes 2022.Cytogenetic and genome research · 2022
    Review
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Fuwei LiPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, 250023, People's Republic of China.
Haixia HanPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, 250023, People's Republic of China.
Qiuxia LeiPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, 250023, People's Republic of China.
Jinbo GaoPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, 250023, People's Republic of China.
Jie LiuPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, 250023, People's Republic of China.
Wei LiuPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, 250023, People's Republic of China.
Yan ZhouPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, 250023, People's Republic of China.
Huimin LiPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, 250023, People's Republic of China.
Dingguo CaoPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, 250023, People's Republic of China. lifuwei1224@163.com.
Shandong Academy of Agricultural Sciences · CNPoultry Research Institute · CN

Funding

Jinan Layer Experiment Station of China Agriculture Research System CARA-40-S12The Major Natural Science Foundation of Shandong Province, China ZR2014CZ003The Youth Scientific Research Foundation of Shandong Academy of Agricultural Sciences 2015YQN53
6 · The paper itself

Abstract

Chicken body weight (BW) is an economically important trait, and many studies have been conducted on genetic selection for BW. However, previous studies have detected functional chromosome mutations or regions using gene chips. The present study used the specific-locus amplified fragment sequencing (SLAF-seq) technology to perform a genome-wide association study (GWAS) on purebred Wengshang Barred chicken. A total of 1,286,715 single-nucleotide polymorphisms (SNPs) were detected, and 175,211 SNPs were selected as candidate SNPs for genome-wide association analysis using TASSEL general linear models. Six SNP markers reached genome-wide significance. Of these, rs732048524, rs735522839, rs738991545, and rs15837818 were significantly associated with body weight at 28 days (BW28), while rs314086457 and rs315694878 were significantly associated with BW120. These SNPs are close to seven genes (PRSS23, ME3, FAM181B, NABP1, SDPR, TSSK6L2, and RBBP8). Moreover, 24 BW-associated SNPs reached "suggestive" genome-wide significance. Of these, 6, 13, 1, and 4 SNPs were associated with BW28, BW56, BW80, and BW120, respectively. These results would enrich the studies on BW and promote the use of Chinese chicken, especially the Wenshang Barred chicken.

Indexed as

Genome-Wide Association StudyPolymorphism, Single NucleotideSequence Analysis, DNAAnimalsBody WeightChickensChromosome MappingCluster AnalysisMalePhenotypeQuantitative Trait, HeritableQuantitative Trait LociBody weightGenome-wide association studySLAF-seqWenshang Barred chicken

Identifiers

PMID29946990
OpenAlexW2810316789

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.