Evidence map›Paper›PMID 29953444›Full record

Trial reportPloS one2018

Genetic contributions to lupus nephritis in a multi-ethnic cohort of systemic lupus erythematous patients.

Cristina M Lanata, Joanne Nititham, Kimberly E Taylor, Sharon A Chung, Dara G Torgerson, Michael F Seldin, Bernardo A Pons-Estel, Teresa Tusié-Luna, Betty P Tsao, Eric F Morand and 2 more

Open access · goldAbstract readClinical TrialMulticenter Study
In one paragraph

Trial report in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 2 pooled it
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 2 syntheses or guidelines pooled it, 68 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Review
  5. Article
  6. Article
  7. Molecular and Cellular Mediators of Renal Fibrosis in Lupus Nephritis.International journal of molecular sciences · 2025
    Review
  8. [Update on lupus nephritis].Zeitschrift fur Rheumatologie · 2024
    Review
  9. Does the esv3587290 Copy Number Variation in theChildren (Basel, Switzerland) · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Lupus Nephritis Biomarkers: A Critical Review.International journal of molecular sciences · 2024
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 6 countries.

Cristina M LanataRussell/Engleman Rheumatology Research Center, Department of Medicine, University of California San Francisco, San Francisco, CA, United States of America.ORCID 0000-0002-6017-4921
Joanne NitithamRussell/Engleman Rheumatology Research Center, Department of Medicine, University of California San Francisco, San Francisco, CA, United States of America.
Kimberly E TaylorRussell/Engleman Rheumatology Research Center, Department of Medicine, University of California San Francisco, San Francisco, CA, United States of America.
Sharon A ChungRussell/Engleman Rheumatology Research Center, Department of Medicine, University of California San Francisco, San Francisco, CA, United States of America.
Dara G TorgersonDepartment of Pediatrics, University of California San Francisco, San Francisco, California, United States of America.
Michael F SeldinDepartment of Biochemistry and Molecular Medicine, University of California Davis, Davis, California, United States of America.
Bernardo A Pons-EstelHospital Sanatorio Parque, Rosario, Argentina.
Teresa Tusié-LunaInstituto Nacional de Ciencias Médicas y Nutrición Salvador Zubiran and Instituto de Investigaciones Biomédicas de la Universidad Nacional Autónoma de Mexico, Mexico City, Mexico.
Betty P TsaoDepartment of Medicine, Medical University of South Carolina, Charleston, South Carolina, United States of America.
Eric F MorandSchool of Clinical Sciences, Monash University Faculty of Medicine, Nursing & Health Sciences, Melbourne, VIC, Australia.
Marta E Alarcón-RiquelmePfizer-University of Granada-Andalusian Government Center for Genomics and Oncological Research (GENYO), PTS, Granada, Spain.
Lindsey A CriswellRussell/Engleman Rheumatology Research Center, Department of Medicine, University of California San Francisco, San Francisco, CA, United States of America.
University of California, San Francisco · USCentro Científico Tecnólogico - Rosario · ARInstituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán · MXKarolinska Institutet · SEMedical University of South Carolina · USMonash University · AUUniversity of California, Davis · US

Funding

The Interplay of Sociodemographic and Genetic Factors in SLE Health DisparitiesP60AR053308 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI YELIN, EDWARD H · 2006 to 2016
$11.8M
RESOURCE-BASED CENTER FOR THE ADVANCEMENT OF PRECISION MEDICINE IN RHEUMATOLOGYP30AR070155 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Mary C Nakamura · 2016 to 2026
$8.2M
ACADEMIC RHEUMATOLOGY AND CLINICAL IMMUNOLOGYT32AR007304 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DAIKH, DAVID I · 1986 to 2018
$6.0M
CHROMOSOME REGIONS LINKED TO SLE IN MULTIPLEX FAMILIESR01AR043814 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TSAO, BETTY P · 1997 to 2012
$5.7M
NIAMS NIH HHS P30 AR070155NIAMS NIH HHS P60 AR053308NIAMS NIH HHS R01 AR043814NIAMS NIH HHS T32 AR007304
6 · The paper itself

Abstract

objectiveAfrican Americans, East Asians, and Hispanics with systemic lupus erythematous (SLE) are more likely to develop lupus nephritis (LN) than are SLE patients of European descent. The etiology of this difference is not clear, and this study was undertaken to investigate how genetic variants might explain this effect.

methodsIn this cross-sectional study, 1244 SLE patients from multiethnic case collections were genotyped for 817,810 single-nucleotide polymorphisms (SNPs) across the genome. Continental genetic ancestry was estimated utilizing the program ADMIXTURE. Gene-based testing and pathway analysis was performed within each ethnic group and meta-analyzed across ethnicities. We also performed candidate SNP association tests with SNPs previously established as risk alleles for SLE, LN, and chronic kidney disease (CKD). Association testing and logistic regression models were performed with LN as the outcome, adjusted for continental ancestries, sex, disease duration, and age.

resultsWe studied 255 North European, 263 South European, 238 Hispanic, 224 African American and 264 East Asian SLE patients, of whom 606 had LN (48.7%). In genome-wide gene-based and candidate SNP analyses, we found distinct genes, pathways and established risk SNPs associated with LN for each ethnic group. Gene-based analyses showed significant associations between variation in ZNF546 (p = 1.0E-06), TRIM15 (p = 1.0E-06), and TRIMI0 (p = 1.0E-06) and LN among South Europeans, and TTC34 (p = 8.0E-06) was significantly associated with LN among Hispanics. The SNP rs8091180 in NFATC1 was associated with LN (OR 1.43, p = 3.3E-04) in the candidate SNP meta-analysis with the highest OR among African-Americans (OR 2.17, p = 0.0035).

conclusionDistinct genetic factors are associated with the risk of LN in SLE patients of different ethnicities. CKD risk alleles may play a role in the development of LN in addition to SLE-associated risk variants. These findings may further explain the clinical heterogeneity of LN risk and response to therapy observed between different ethnic groups.

Indexed as

Models, GeneticPolymorphism, Single NucleotideAdultCohort StudiesFemaleHumansLupus NephritisMaleMiddle AgedRisk Factors

Identifiers

PMID29953444
PMCPMC6023154
OpenAlexW2810268000

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.