Evidence map›Paper›PMID 29956500›Full record

ArticleCancer medicine2018

A regulatory mutant on TRIM26 conferring the risk of nasopharyngeal carcinoma by inducing low immune response.

Xiao-Ming Lyu, Xiao-Wei Zhu, Manli Zhao, Xian-Bo Zuo, Zhong-Xi Huang, Xiao Liu, Tao Jiang, Xue-Xi Yang, Xin Li, Xiao-Bing Long and 18 more

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 17 institutions in 2 countries.

Xiao-Ming LyuDepartment of laboratory medicine, The Third Affiliated Hospital, Southern Medical University, Guangzhou, China.
Xiao-Wei ZhuInstitute of Basic Medical Sciences, Westlake Institute for Advanced Study, Westlake University, Hangzhou, Zhejiang, China.
Manli ZhaoDepartment of Pathology, School of Medicine, The Children Hospital of Zhejiang University, Hangzhou, China.
Xian-Bo ZuoInstitute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China.
Zhong-Xi HuangCancer Research Institute and the Provincial Key Laboratory of Functional Proteomics, Southern Medical University, Guangzhou, China.
Xiao LiuBeijing Genome Institute (BGI), Shenzhen, China.
Tao JiangBeijing Genome Institute (BGI), Shenzhen, China.
Xue-Xi YangSchool of Biotechnology of Southern Medical University, Guangzhou, China.
Xin LiClinical Laboratory, Nanfang Hospital of Southern Medical University, Guangzhou, China.
Xiao-Bing LongDepartment of Otolaryngology-Head and Neck Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou, China.
Jian-Guo WangShenzhen Key Laboratory of Viral Oncology, the Clinical Innovation & Research Center (CIRC), Shenzhen Hospital, Southern Medical University, Shenzhen, China.
Jin-Bang LiDepartment of Pathology, Qingyuan People's Hospital, Qingyuan, China.
Ming-Yu HanSchool of Biomolecular and Biomedical Science, University College Dublin, Dublin, Ireland.
Shuang WangDepartment of Pathology, Nanfang Hospital of Southern Medical University, Guangzhou, China.
Teng-Fei LiuDepartment of Pathology, Nanfang Hospital of Southern Medical University, Guangzhou, China.
Bo ZhangThe Second Affiliated Hospital of Soochow University, Suzhou, Jiangsu, China.
Tao SunSuzhou Science& Technology Town Hospital, Suzhou Hospital Affiliated to Nanjing Medical University, Suzhou, Jiangsu, China.
Zhi ChengSuzhou Science& Technology Town Hospital, Suzhou Hospital Affiliated to Nanjing Medical University, Suzhou, Jiangsu, China.
Mo-Chang QiuJiangxi Medical College, Shangrao, Jiangxi, China.
Lei DongSchool of Life Science, Beijing Institute of Technology, Beijing, China.
Lu ZhengTongji Hospital Affiliated to Tongji Medical College of Huazhong University of Science and Technology, Wuhan, Hubei, China.
Long-Cheng ZhangDepartment of Otolaryngology-Head and Neck Surgery, 303 Hospital of People's Liberation Army of China, Nanning, China.
Jia-Hong WangCancer Research Institute and the Provincial Key Laboratory of Functional Proteomics, Southern Medical University, Guangzhou, China.
Gan-Guan WeiDepartment of Otolaryngology-Head and Neck Surgery, 303 Hospital of People's Liberation Army of China, Nanning, China.
Kaitai YaoCancer Research Institute and the Provincial Key Laboratory of Functional Proteomics, Southern Medical University, Guangzhou, China.
Qian WangZhujiang Hospital, Southern Medical University, Guangzhou, China.
Hou-Feng ZhengInstitute of Basic Medical Sciences, Westlake Institute for Advanced Study, Westlake University, Hangzhou, Zhejiang, China.ORCID 0000-0001-5681-8598
Xin LiShenzhen Key Laboratory of Viral Oncology, the Clinical Innovation & Research Center (CIRC), Shenzhen Hospital, Southern Medical University, Shenzhen, China.
303 Hospital of People's Liberation Army · CNFudan University · CNSouthern Medical University Shenzhen Hospital · CNZhujiang Hospital · CNBGI Group (China) · CNNanfang Hospital · CNSoochow University · CNSouthern Medical University · CNUniversity College Dublin · IEAnhui Medical University · CNBeijing Institute of Technology · CNChildren's Hospital of Zhejiang University · CNFirst Affiliated Hospital of Jiangxi Medical College · CNQingzhou City People's Hospital · CNShangrao Normal University · CNSuzhou Municipal Hospital · CNThird Affiliated Hospital of Southern Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The major histocompatibility complex (MHC) is most closely associated with nasopharyngeal carcinoma (NPC), but the complexity of its genome structure has proven challenging for the discovery of causal MHC loci or genes. We conducted a targeted MHC sequencing in 40 Cantonese NPC patients followed by a two-stage replication in 1065 NPC cases and 2137 controls of Southern Chinese descendent. Quantitative RT-PCR analysis (qRT-PCR) was used to detect gene expression status in 108 NPC and 43 noncancerous nasopharyngeal (NP) samples. Luciferase reporter assay and chromatin immunoprecipitation (ChIP) were used to assess the transcription factor binding site. We discovered that a novel SNP rs117565607_A at TRIM26 displayed the strongest association (OR = 1.909, Pcombined = 2.750 × 10

Indexed as

Gene Expression Regulation, NeoplasticMutationAllelesCase-Control StudiesCell Line, TumorDNA-Binding ProteinsFemaleGene Expression ProfilingGenotypeHigh-Throughput Nucleotide SequencingHumansImmunomodulationKiller Cells, NaturalLeukocytes, MononuclearMaleNasopharyngeal CarcinomaDNA-Binding ProteinsTRIM26 protein, humanTripartite Motif ProteinsUbiquitin-Protein Ligasesimmune responsenasopharyngeal carcinomasingle-nucleotide polymorphismstargeted MHC sequencingTRIM26

Identifiers

PMID29956500
PMCPMC6089173
OpenAlexW2810410947

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.