Evidence map›Paper›PMID 29967481›Full record

ArticleScientific reports2018

Genetic variants in systemic lupus erythematosus susceptibility loci, XKR6 and GLT1D1 are associated with childhood-onset SLE in a Korean cohort.

Young Bin Joo, Jiwoo Lim, Betty P Tsao, Swapan K Nath, Kwangwoo Kim, Sang-Cheol Bae

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
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  8. Article
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  11. Genetic load in incomplete lupus erythematosus.Lupus science & medicine · 2023
    Article
  12. Review
  13. A Non-Coding Variant inFrontiers in lupus · 2023
    Article
  14. Loss-of-function variants inAnnals of the rheumatic diseases · 2022
    Article
  15. Article
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  17. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 6 institutions in 2 countries.

Young Bin JooDepartment of Rheumatology, St. Vincent's Hospital, The Catholic University of Korea, Suwon, Republic of Korea.
Jiwoo LimDepartment of Biology, Kyung Hee University, Seoul, Republic of Korea.
Betty P TsaoDivision of Rheumatology and Immunology, Department of Medicine, Medical University of South Carolina, Charleston, South Carolina, USA.
Swapan K NathArthritis and Clinical Immunology Research Program, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma, USA.
Kwangwoo KimDepartment of Biology, Kyung Hee University, Seoul, Republic of Korea. kkim@khu.ac.kr.ORCID 0000-0001-8926-6216
Sang-Cheol BaeDepartment of Rheumatology, Hanyang University Hospital for Rheumatic Diseases, Seoul, Republic of Korea. scbae@hanyang.ac.kr.
Hanyang University Seoul Hospital · KRKyung Hee Cyber University · KRKyung Hee University · KRMedical University of South Carolina · USOklahoma Medical Research Foundation · USThe Catholic University of Korea St. Vincent's Hospital · KR

Funding

SLE Susceptibility and Clinical Significance at 2q22-24 across Multiple EthnicitiR01AR060366 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI NATH, SWAPAN K. · 2010 to 2019
$3.3M
Health Disparities and Genetic Architecture of Lupus in African AmericansR01MD007909 · NIMHD · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI NATH, SWAPAN K. · 2014 to 2018
$2.1M
NIAMS NIH HHS R01 AR060366NIMHD NIH HHS R01 MD007909
6 · The paper itself

Abstract

Impact of genetic variants on the age of systemic lupus erythematosus (SLE) onset was not fully understood. We investigated a cumulative effect of SLE-risk variants on the age of SLE onset and scanned genome-wide SNPs to search for new risk loci of childhood-onset SLE (cSLE). We analyzed 781 Korean single-center SLE subjects who previously genotyped by both Immunochip and genome-wide SNP arrays. Individual genetic risk scores (GRS) from well-validated SLE susceptibility loci were calculated and tested for their association with cSLE (<16 years at onset). Single-variant association tests were performed using a multivariable logistic regression adjusting for population stratification. GRS from SLE susceptibility loci was significantly higher in cSLE than aSLE (p = 1.23 × 10

Indexed as

AdolescentAge of OnsetAsian PeopleChildCohort StudiesFemaleGalactosyltransferasesGenetic Predisposition to DiseaseHumansLupus Erythematosus, SystemicMaleModels, GeneticPolymorphism, Single NucleotideROC CurveCOLGALT1 protein, humanGalactosyltransferases

Identifiers

PMID29967481
PMCPMC6028392
OpenAlexW2811287296

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.