Evidence map›Paper›PMID 30010856›Full record

ArticleHuman molecular genetics2018

Epigenetic changes of the thioredoxin system in the tx-j mouse model and in patients with Wilson disease.

Charles E Mordaunt, Noreene M Shibata, Dorothy A Kieffer, Anna Czlonkowska, Tomasz Litwin, Karl Heinz Weiss, Daniel N Gotthardt, Kristin Olson, Dongguang Wei, Stewart Cooper and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Wilson Disease: Update on Pathophysiology and Treatment.Frontiers in cell and developmental biology · 2022
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Genetics and epigenetic factors of Wilson disease.Annals of translational medicine · 2019
    Review
  14. Article
  15. Update on the Diagnosis and Management of Wilson Disease.Current gastroenterology reports · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

Charles E MordauntDepartment of Medical Microbiology and Immunology, Genome Center, and MIND Institute, University of California, Davis, California, USA.
Noreene M ShibataDepartment of Internal Medicine, Division of Gastroenterology and Hepatology, University of California, Davis, California, USA.
Dorothy A KiefferDepartment of Internal Medicine, Division of Gastroenterology and Hepatology, University of California, Davis, California, USA.
Anna CzlonkowskaSecond Department of Neurology, Institute of Psychiatry and Neurology, Warsaw, Poland.
Tomasz LitwinSecond Department of Neurology, Institute of Psychiatry and Neurology, Warsaw, Poland.
Karl Heinz WeissDepartment of Internal Medicine IV, University Hospital Heidelberg, Heidelberg, Germany.
Daniel N GotthardtDepartment of Internal Medicine IV, University Hospital Heidelberg, Heidelberg, Germany.
Kristin OlsonDepartment of Pathology, University of California, Davis, California, USA.
Dongguang WeiDepartment of Pathology, University of California, Davis, California, USA.
Stewart CooperCalifornia Pacific Medical Center, San Francisco, California, USA.
Yu-Jui Yvonne WanDepartment of Pathology, University of California, Davis, California, USA.
Mohamed R AliDepartment of Surgery, University of California, Davis, California, USA.
Janine M LaSalleDepartment of Medical Microbiology and Immunology, Genome Center, and MIND Institute, University of California, Davis, California, USA.
Valentina MediciDepartment of Internal Medicine, Division of Gastroenterology and Hepatology, University of California, Davis, California, USA.
University of California, Davis · USInstitute of Psychiatry and Neurology · PLCalifornia Pacific Medical Center · USHeidelberg University · DEUniversity Hospital Heidelberg · DEUniversity of California Davis Medical Center · US

Funding

UC Davis Clinical and Translational Science CenterUL1TR001860 · NCATS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KENYON, NICHOLAS J., LYLES, COURTNEY REES · 2016 to 2025
$47.3M
UCSF Liver Core CenterP30DK026743 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Holger Willenbring · 1986 to 2026
$30.7M
Epigenetic regulation of Wilson DiseaseR01DK104770 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI MEDICI, VALENTINA · 2016 to 2020
$1.8M
Genome Sequencer FLXS10RR029668 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI NGAI, JOHN J. · 2010 to 2010
$623k
Illumina Sequencer to Facilitate Functional Genomics at BerkeleyS10RR027303 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI TAYLOR, JOHN W. · 2010 to 2010
$500k
Wilson Disease: Effect of High-Choline Feeding on Fetal and Offspring Mouse LiverR03DK099427 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI MEDICI, VALENTINA · 2014 to 2015
$156k
NCATS NIH HHS UL1 TR001860NCRR NIH HHS S10 RR027303NCRR NIH HHS S10 RR029668NIDDK NIH HHS P30 DK026743NIDDK NIH HHS R01 DK104770
6 · The paper itself

Abstract

Wilson disease (WD) is caused by mutations in the copper transporter ATP7B, leading to copper accumulation in the liver and brain. Excess copper inhibits S-adenosyl-L-homocysteine hydrolase, leading to variable WD phenotypes from widespread alterations in DNA methylation and gene expression. Previously, we demonstrated that maternal choline supplementation in the Jackson toxic milk (tx-j) mouse model of WD corrected higher thioredoxin 1 (TNX1) transcript levels in fetal liver. Here, we investigated the effect of maternal choline supplementation on genome-wide DNA methylation patterns in tx-j fetal liver by whole-genome bisulfite sequencing (WGBS). Tx-j Atp7b genotype-dependent differences in DNA methylation were corrected by choline for genes including, but not exclusive to, oxidative stress pathways. To examine phenotypic effects of postnatal choline supplementation, tx-j mice were randomized to one of six treatment groups: with or without maternal and/or continued choline supplementation, and with or without copper chelation with penicillamine (PCA) treatment. Hepatic transcript levels of TXN1 and peroxiredoxin 1 (Prdx1) were significantly higher in mice receiving maternal and continued choline with or without PCA treatment compared to untreated mice. A WGBS comparison of human WD liver and tx-j mouse liver demonstrated a significant overlap of differentially methylated genes associated with ATP7B deficiency. Further, eight genes in the thioredoxin (TXN) pathway were differentially methylated in human WD liver samples. In summary, Atp7b deficiency and choline supplementation have a genome-wide impact, including on TXN system-related genes, in tx-j mice. These findings could explain the variability of WD phenotype and suggest new complementary treatment options for WD.

Indexed as

AnimalsChelating AgentsCholineCopperCopper-Transporting ATPasesDisease Models, AnimalDNA MethylationEpigenesis, GeneticFemaleGene Expression RegulationHepatolenticular DegenerationHumansLiverMaternal InheritanceMiceOxidative StressAtp7b protein, mouseChelating AgentsCholineCopperCopper-Transporting ATPasesPenicillaminePeroxiredoxinsPrdx1 protein, mouseThioredoxinsTxn1 protein, mouseTXN protein, human

Identifiers

PMID30010856
PMCPMC6216211
OpenAlexW2884314313

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.