Evidence map›Paper›PMID 30066140›Full record

ArticleCurrent genetics2019

Implications of maintenance of mother-bud neck size in diverse vital processes of Saccharomyces cerevisiae.

Karen Kubo, Hiroki Okada, Takuya Shimamoto, Yoshitaka Kimori, Masaki Mizunuma, Erfei Bi, Shinsuke Ohnuki, Yoshikazu Ohya

Abstract read
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In one paragraph

Article in Current genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Defining Functions of Mannoproteins inJournal of fungi (Basel, Switzerland) · 2021
    Article
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  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Karen KuboDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba, 277-8562, Japan.
Hiroki OkadaDepartment of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104-6058, USA.
Takuya ShimamotoDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba, 277-8562, Japan.
Yoshitaka KimoriDepartment of Imaging Science, Center for Novel Science Initiatives, National Institutes of Natural Sciences, Okazaki, 444-8787, Japan.
Masaki MizunumaDepartment of Molecular Biotechnology, Graduate School of Advanced Sciences of Matter, Hiroshima University, Higashi-Hiroshima, 739-8530, Japan.
Erfei BiDepartment of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104-6058, USA.
Shinsuke OhnukiDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba, 277-8562, Japan.
Yoshikazu OhyaDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba, 277-8562, Japan. ohya@k.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0003-0837-1239
The University of Tokyo · JPUniversity of Pennsylvania · USFukui University of Technology · JPHiroshima University · JPNational Institute of Advanced Industrial Science and Technology · JP

Funding

Mechanistic Analysis of Cytokinesis in EukaryotesR01GM115420 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BI, ERFEI · 2015 to 2022
$3.7M
NIGMS NIH HHS R01 GM115420NIH HHS GM115420
6 · The paper itself

Abstract

The mother-bud neck is defined as the boundary between the mother cell and bud in budding microorganisms, wherein sequential morphological events occur throughout the cell cycle. This study was designed to quantitatively investigate the morphology of the mother-bud neck in budding yeast Saccharomyces cerevisiae. Observation of yeast cells with time-lapse microscopy revealed an increase of mother-bud neck size through the cell cycle. After screening of yeast non-essential gene-deletion mutants with the image processing software CalMorph, we comprehensively identified 274 mutants with broader necks during S/G2 phase. Among these yeasts, we extensively analyzed 19 representative deletion mutants with defects in genes annotated to six gene ontology terms (polarisome, actin reorganization, endosomal tethering complex, carboxy-terminal domain protein kinase complex, DNA replication, and maintenance of DNA trinucleotide repeats). The representative broad-necked mutants exhibited calcofluor white sensitivity, suggesting defects in their cell walls. Correlation analysis indicated that maintenance of mother-bud neck size is important for cellular processes such as cell growth, system robustness, and replicative lifespan. We conclude that neck-size maintenance in budding yeast is regulated by numerous genes and has several aspects that are physiologically significant.

Indexed as

MutationActinsCell CycleCell DivisionCell WallGene Expression Regulation, FungalGene OntologyMicroscopy, ConfocalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTime-Lapse ImagingActinsSaccharomyces cerevisiae ProteinsCalMorphLifespanMorphogenesisMother–bud neckSaccharomyces cerevisiae

Identifiers

PMID30066140
OpenAlexW2885745095

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.