Evidence map›Paper›PMID 30085657›Full record

ArticleACS chemical biology2018

A Commensal Dipeptidyl Aminopeptidase with Specificity for N-Terminal Glycine Degrades Human-Produced Antimicrobial Peptides in Vitro.

Janice H Xu, Zhenze Jiang, Angelo Solania, Sandip Chatterjee, Brian Suzuki, Christopher B Lietz, Vivian Y H Hook, Anthony J O'Donoghue, Dennis W Wolan

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Identification of a secreted protease frombioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Article
  8. Structure determinants defining the specificity of papain-like cysteine proteases.Computational and structural biotechnology journal · 2022
    Review
  9. Article
  10. Article
  11. Gut microbes
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Janice H XuDepartment of Molecular Medicine , The Scripps Research Institute , 10550 North Torrey Pines Road , La Jolla , California 92037 , United States.
Zhenze JiangSkaggs School of Pharmacy and Pharmaceutical Sciences , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093 , United States.
Angelo SolaniaDepartment of Molecular Medicine , The Scripps Research Institute , 10550 North Torrey Pines Road , La Jolla , California 92037 , United States.
Sandip ChatterjeeDepartment of Molecular Medicine , The Scripps Research Institute , 10550 North Torrey Pines Road , La Jolla , California 92037 , United States.
Brian SuzukiSkaggs School of Pharmacy and Pharmaceutical Sciences , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093 , United States.
Christopher B LietzSkaggs School of Pharmacy and Pharmaceutical Sciences , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093 , United States.
Vivian Y H HookSkaggs School of Pharmacy and Pharmaceutical Sciences , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093 , United States.
Anthony J O'DonoghueSkaggs School of Pharmacy and Pharmaceutical Sciences , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093 , United States.ORCID 0000-0001-5695-0409
Dennis W WolanDepartment of Molecular Medicine , The Scripps Research Institute , 10550 North Torrey Pines Road , La Jolla , California 92037 , United States.ORCID 0000-0001-9879-8353
University of California San Diego · USScripps Research Institute · US

Funding

FELLOWSHIP IN GERIATRIC MENTAL HEALTHT32MH019934 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Elizabeth W Twamley · 1994 to 2026
$9.5M
Role of Human-Specific Cathepsin V Protease in the Production of Opioid and Related Peptide NeurotransmittersR01NS094597 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HOOK, VIVIAN Y. H · 2015 to 2019
$1.7M
NIMH NIH HHS T32 MH019934NINDS NIH HHS R01 NS094597
6 · The paper itself

Abstract

Proteases within the C1B hydrolase family are encoded by many organisms. We subjected a putative C1B-like cysteine protease secreted by the human gut commensal Parabacteroides distasonis to mass spectrometry-based substrate profiling to find preferred peptide substrates. The P. distasonis protease, which we termed Pd_dinase, has a sequential diaminopeptidase activity with strong specificity for N-terminal glycine residues. Using the substrate sequence information, we verified the importance of the P2 glycine residue with a panel of fluorogenic substrates and calculated k

Indexed as

Gastrointestinal MicrobiomeAminopeptidasesAntimicrobial Cationic PeptidesBacteroidesGlycineHumansModels, MolecularProtein MultimerizationProteolysisSubstrate SpecificityAminopeptidasesAntimicrobial Cationic PeptidesGlycine

Identifiers

PMID30085657
PMCPMC7293822
OpenAlexW2886469784

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.