Evidence map›Paper›PMID 30102323›Full record

ArticleJournal of experimental botany2018

Selective sets of mRNAs localize to extracellular paramural bodies in a rice glup6 mutant.

Yongil Yang, Hong-Li Chou, Andrew J Crofts, Laining Zhang, Li Tian, Haruhiko Washida, Masako Fukuda, Toshihiro Kumamaru, Oliver J Oviedo, Shawn R Starkenburg and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. mRNA Localization to the Endoplasmic Reticulum in Plant Endosperm Cells.International journal of molecular sciences · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. mRNA Localization in Plant Cells.Plant physiology · 2020
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Yongil YangInstitute of Biological Chemistry, Washington State University, Pullman, WA, USA.
Hong-Li ChouInstitute of Biological Chemistry, Washington State University, Pullman, WA, USA.
Andrew J CroftsInternational Liberal Arts Program, Akita International University, Akita, Japan.
Laining ZhangInstitute of Biological Chemistry, Washington State University, Pullman, WA, USA.
Li TianInstitute of Biological Chemistry, Washington State University, Pullman, WA, USA.
Haruhiko WashidaInstitute of Biological Chemistry, Washington State University, Pullman, WA, USA.
Masako FukudaFaculty of Agriculture, Kyushu University, Motooka Nishi-ku, Fukuoka, Japan.
Toshihiro KumamaruFaculty of Agriculture, Kyushu University, Motooka Nishi-ku, Fukuoka, Japan.
Oliver J OviedoNew Mexico Consortium, Los Alamos, NM, USA.
Shawn R StarkenburgNew Mexico Consortium, Los Alamos, NM, USA.
Thomas W OkitaInstitute of Biological Chemistry, Washington State University, Pullman, WA, USA.
Washington State University · USKyushu University · JPNew Mexico Consortium · USAkita International University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transport of rice glutelin storage proteins to the storage vacuoles requires the Rab5 GTPase and its related guanine nucleotide exchange factor (Rab5-GEF). Loss of function of these membrane vesicular trafficking factors results in the initial secretion of storage proteins and later their partial engulfment by the plasma membrane to form an extracellular paramural body (PMB), an aborted endosome complex. Here, we show that in the rice Rab5-GEF mutant glup6, glutelin RNAs are specifically mislocalized from their normal location on the cisternal endoplasmic reticulum (ER) to the protein body-ER, and are also apparently translocated to the PMBs. We substantiated the association of mRNAs with this aborted endosome complex by RNA-seq of PMBs purified by flow cytometry. Two PMB-associated groups of RNA were readily resolved: those that were specifically enriched in this aborted complex and those that were highly expressed in the cytoplasm. Examination of the PMB-enriched RNAs indicated that they were not a random sampling of the glup6 transcriptome but, instead, encompassed only a few functional mRNA classes. Although specific autophagy is also an alternative mechanism, our results support the view that RNA localization may co-opt membrane vesicular trafficking, and that many RNAs that share function or intracellular location are co-transported in developing rice seeds.

Indexed as

GlutensGuanine Nucleotide Exchange FactorsOryzaPlant Proteinsrab5 GTP-Binding ProteinsRNA, MessengerRNA, PlantGlutensGuanine Nucleotide Exchange FactorsPlant Proteinsrab5 GTP-Binding ProteinsRNA, MessengerRNA, Plant

Identifiers

PMID30102323
PMCPMC6189835
OpenAlexW2885608224

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.