Evidence map›Paper›PMID 30111591›Full record

SynthesisThe Journal of biological chemistry2018

Nur77 variants solely comprising the amino-terminal domain activate hypoxia-inducible factor-1α and affect bone marrow homeostasis in mice and humans.

Duco S Koenis, Lejla Medzikovic, Mariska Vos, Thijs J Beldman, Pieter B van Loenen, Claudia M van Tiel, Anouk A J Hamers, Iker Otermin Rubio, Vivian de Waard, Carlie J M de Vries

Open access · hybridAbstract readMeta-Analysis
In one paragraph

Synthesis in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Duco S KoenisFrom the Department of Medical Biochemistry, Amsterdam Cardiovascular Sciences, Academic Medical Center, K1-113, University of Amsterdam, Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands.
Lejla MedzikovicFrom the Department of Medical Biochemistry, Amsterdam Cardiovascular Sciences, Academic Medical Center, K1-113, University of Amsterdam, Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands.
Mariska VosFrom the Department of Medical Biochemistry, Amsterdam Cardiovascular Sciences, Academic Medical Center, K1-113, University of Amsterdam, Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands.
Thijs J BeldmanFrom the Department of Medical Biochemistry, Amsterdam Cardiovascular Sciences, Academic Medical Center, K1-113, University of Amsterdam, Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands.
Pieter B van LoenenFrom the Department of Medical Biochemistry, Amsterdam Cardiovascular Sciences, Academic Medical Center, K1-113, University of Amsterdam, Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands.
Claudia M van TielFrom the Department of Medical Biochemistry, Amsterdam Cardiovascular Sciences, Academic Medical Center, K1-113, University of Amsterdam, Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands.
Anouk A J HamersFrom the Department of Medical Biochemistry, Amsterdam Cardiovascular Sciences, Academic Medical Center, K1-113, University of Amsterdam, Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands.
Iker Otermin RubioFrom the Department of Medical Biochemistry, Amsterdam Cardiovascular Sciences, Academic Medical Center, K1-113, University of Amsterdam, Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands.
Vivian de WaardFrom the Department of Medical Biochemistry, Amsterdam Cardiovascular Sciences, Academic Medical Center, K1-113, University of Amsterdam, Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands.
Carlie J M de VriesFrom the Department of Medical Biochemistry, Amsterdam Cardiovascular Sciences, Academic Medical Center, K1-113, University of Amsterdam, Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands c.j.devries@amc.uva.nl.
Academic Medical Center · NLUniversity of Amsterdam · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene targeting via homologous recombination can occasionally result in incomplete disruption of the targeted gene. Here, we show that a widely used Nur77-deficient transgenic mouse model expresses a truncated protein encoding for part of the N-terminal domain of nuclear receptor Nur77. This truncated Nur77 protein is absent in a newly developed Nur77-deficient mouse strain generated using Cre-Lox recombination. Comparison of these two mouse strains using immunohistochemistry, flow cytometry, and colony-forming assays shows that homologous recombination-derived Nur77-deficient mice, but not WT or Cre-Lox-derived Nur77-deficient mice, suffer from liver immune cell infiltrates, loss of splenic architecture, and increased numbers of bone marrow hematopoietic stem cells and splenic colony-forming cells with age. Mechanistically, we demonstrate that the truncated Nur77 N-terminal domain protein maintains the stability and activity of hypoxia-inducible factor (HIF)-1, a transcription factor known to regulate bone marrow homeostasis. Additionally, a previously discovered, but uncharacterized, human Nur77 transcript variant that encodes solely for its N-terminal domain, designated TR3β, can also stabilize and activate HIF-1α. Meta-analysis of publicly available microarray data sets shows that TR3β is highly expressed in human bone marrow cells and acute myeloid leukemia samples. In conclusion, our study provides evidence that a transgenic mouse model commonly used to study the biological function of Nur77 has several major drawbacks, while simultaneously identifying the importance of nongenomic Nur77 activity in the regulation of bone marrow homeostasis.

Indexed as

AnimalsBone MarrowBone Marrow CellsFlow CytometryGene Expression RegulationHomeostasisHumansHypoxia-Inducible Factor 1, alpha SubunitMiceMice, TransgenicNuclear Receptor Subfamily 4, Group A, Member 1Protein DomainsHypoxia-Inducible Factor 1, alpha SubunitNR4A1 protein, humanNuclear Receptor Subfamily 4, Group A, Member 1bone marrowgene knockouthomeostasishypoxia-inducible factor (HIF)livernuclear receptorNur77transcription factortranscript variant

Identifiers

PMID30111591
PMCPMC6166732
OpenAlexW2885064681

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.