Evidence map›Paper›PMID 30153810›Full record

ArticleBMC genomics2018

The landscape of mitochondrial small non-coding RNAs in the PGCs of male mice, spermatogonia, gametes and in zygotes.

Eduardo Larriba, Eduardo Rial, Jesús Del Mazo

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
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  5. Review
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  12. Article
  13. Mitochondrial regulation during male germ cell development.Cellular and molecular life sciences : CMLS · 2022
    Review
  14. Article
  15. mtTB: A Web-Based R/Shiny App for Pulmonary Tuberculosis Screening.Frontiers in cellular and infection microbiology · 2022
    Article
  16. Review
  17. Maternal background alters the penetrance of growth phenotypes and sex-specific placental adaptation of offspring sired by alcohol-exposed males.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2021
    Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Eduardo LarribaDepartment of Cellular & Molecular Biology, Centro de Investigaciones Biológicas C.I.B. (CSIC), Ramiro de Maeztu 9, 28040, Madrid, Spain.
Eduardo RialDepartment of Chemical & Physical Biology, Centro de Investigaciones Biológicas C.I.B. (CSIC), Ramiro de Maeztu 9, 28040, Madrid, Spain.
Jesús Del MazoDepartment of Cellular & Molecular Biology, Centro de Investigaciones Biológicas C.I.B. (CSIC), Ramiro de Maeztu 9, 28040, Madrid, Spain. jdelmazo@cib.csic.es.ORCID http://orcid.org/0000-0003-3269-3895
Centro de Investigaciones Biológicas Margarita Salas · ES

Funding

Unit of Information Resources for Research (URICI) TC0000100
6 · The paper itself

Abstract

backgroundMitochondria are organelles that fulfill a fundamental role in cell bioenergetics, as well as in other processes like cell signaling and death. Small non-coding RNAs (sncRNA) are now being considered as pivotal post-transcriptional regulators, widening the landscape of their diversity and functions. In mammalian cells, small RNAs encoded by the mitochondrial genome, mitosRNAs were discovered recently, although their biological role remains uncertain.

resultsHere, using specific bioinformatics analyses, we have defined the diversity of mitosRNAs present in early differentiated germ cells of male mice (PGCs and spermatogonia), and in the gametes of both sexes and in zygotes. We found strong transcription of mitosRNAs relative to the size of the mtDNA, and classifying these mitosRNAs into different functional sncRNA groups highlighted the predominance of Piwi-interacting RNAs (piRNAs) relative to the other types of mitosRNAs. Mito-piRNAs were more abundant in oocytes and zygotes, where mitochondria fulfill key roles in fecundation process. Functional analysis of some particular mito-piRNAs (mito-piR-7,456,245), also expressed in 3T3-L1 cells, was assessed after exposure to RNA antagonists.

conclusionsAs far as we are aware, this is the first integrated analysis of sncRNAs encoded by mtDNA in germ cells and zygotes. The data obtained suggesting that mitosRNAs fulfill key roles in gamete differentiation and fertilization.

Indexed as

3T3-L1 CellsAnimalsCell DifferentiationGerm CellsMaleMiceMicroRNAsMitochondriaRNA, Small InterferingRNA, Small UntranslatedSpermatogoniaMicroRNAsRNA, Small InterferingRNA, Small UntranslatedGametesMitochondriaPrimordial germ cellsSmall non-coding RNAZygotes

Identifiers

PMID30153810
PMCPMC6114042
OpenAlexW2889214572

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.