Evidence map›Paper›PMID 30297640›Full record

ArticleInternational journal of molecular sciences2018

Transcriptome Sequencing Reveals the Differentially Expressed lncRNAs and mRNAs Involved in Cryoinjuries in Frozen-Thawed Giant Panda (

Ming-Xia Ran, Yuan Li, Yan Zhang, Kai Liang, Ying-Nan Ren, Ming Zhang, Guang-Bin Zhou, Ying-Min Zhou, Kai Wu, Cheng-Dong Wang and 5 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. A Pilot Analysis of Whole Transcriptome of Human Cryopreserved Sperm.International journal of molecular sciences · 2024
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Ming-Xia RanCollege of Animal Sciences and Technology, Sichuan Agricultural University, Chengdu 611130, Sichuan, China. 18227585649@163.com.
Yuan LiCollege of Animal Sciences and Technology, Sichuan Agricultural University, Chengdu 611130, Sichuan, China. LY13072840231@163.com.
Yan ZhangCollege of Animal Sciences and Technology, Sichuan Agricultural University, Chengdu 611130, Sichuan, China. yanzhang@sicau.edu.cn.
Kai LiangCollege of Animal Sciences and Technology, Sichuan Agricultural University, Chengdu 611130, Sichuan, China. sicau-liangkai@hotmail.com.
Ying-Nan RenCollege of Animal Sciences and Technology, Sichuan Agricultural University, Chengdu 611130, Sichuan, China. J1450544201@163.com.
Ming ZhangCollege of Animal Sciences and Technology, Sichuan Agricultural University, Chengdu 611130, Sichuan, China. zhm3000@126.com.
Guang-Bin ZhouCollege of Animal Sciences and Technology, Sichuan Agricultural University, Chengdu 611130, Sichuan, China. zguangbin@sicau.edu.cn.
Ying-Min ZhouChina Conservation and Research Center for the Giant Panda, Wolong 473000, China. zhouyingmin3552@hotmail.com.
Kai WuChina Conservation and Research Center for the Giant Panda, Wolong 473000, China. Woki1213@163.com.
Cheng-Dong WangChina Conservation and Research Center for the Giant Panda, Wolong 473000, China. wonsir@gmail.com.
Yan HuangChina Conservation and Research Center for the Giant Panda, Wolong 473000, China. pandayard@hotmail.com.
Bo LuoChina Conservation and Research Center for the Giant Panda, Wolong 473000, China. boluo911@126.com.
Izhar Hyder QaziCollege of Animal Sciences and Technology, Sichuan Agricultural University, Chengdu 611130, Sichuan, China. vetdr_izhar@yahoo.com.ORCID 0000-0002-3052-0109
He-Min ZhangChina Conservation and Research Center for the Giant Panda, Wolong 473000, China. hmhm_zhang@163.com.
Chang-Jun ZengCollege of Animal Sciences and Technology, Sichuan Agricultural University, Chengdu 611130, Sichuan, China. zengchj@sicau.edu.cn.ORCID 0000-0002-9797-4551
Sichuan Agricultural University · CNChengdu Research Base of Giant Panda Breeding · CNShaheed Benazir Bhutto University · PK

Funding

National Natural Science Foundation of China 31570533;31872356
6 · The paper itself

Abstract

Sperm cryopreservation and artificial insemination are important methods for giant panda breeding and preservation of extant genetic diversity. Lower conception rates limit the use of artificial insemination with frozen-thawed giant panda sperm, due to the lack of understanding of the cryodamaging or cryoinjuring mechanisms in cryopreservation. Long non-coding RNAs (lncRNAs) are involved in regulating spermatogenesis. However, their roles during cryopreservation remain largely unexplored. Therefore, this study aimed to identify differentially expressed lncRNAs and mRNAs associated with cryodamage or freeze tolerance in frozen-thawed sperm through high throughput sequencing. A total of 61.05 Gb clean reads and 22,774 lncRNA transcripts were obtained. From the sequencing results, 1477 significantly up-regulated and 1,396 significantly down-regulated lncRNA transcripts from fresh and frozen-thawed sperm of giant panda were identified. GO and KEGG showed that the significantly dysregulated lncRNAs and mRNAs were mainly involved in regulating responses to cold stress and apoptosis, such as the integral component of membrane, calcium transport, and various signaling pathways including PI3K-Akt, p53 and cAMP. Our work is the first systematic profiling of lncRNA and mRNA in fresh and frozen-thawed giant panda sperm, and provides valuableinsights into the potential mechanism of cryodamage in sperm.

Indexed as

CryopreservationTranscriptomeAnimalsEndangered SpeciesMaleRNA, Long NoncodingRNA, MessengerSemen PreservationSpermatozoaUrsidaeRNA, Long NoncodingRNA, Messengerfrozen-thawed spermgiant pandalncRNAmRNAtranscriptome sequencing

Identifiers

PMID30297640
PMCPMC6212861
OpenAlexW2895775857

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.