Evidence map›Paper›PMID 30403718›Full record

ArticlePloS one2018

Transcriptome profile analysis of leg muscle tissues between slow- and fast-growing chickens.

Pengfei Wu, Guojun Dai, Fuxiang Chen, Lan Chen, Tao Zhang, Kaizhou Xie, Jinyu Wang, Genxi Zhang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Pooled it
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  10. TheAnimals : an open access journal from MDPI · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Pengfei WuCollege of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, China.ORCID 0000-0002-8660-3464
Guojun DaiCollege of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, China.
Fuxiang ChenCollege of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, China.
Lan ChenCollege of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, China.
Tao ZhangCollege of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, China.
Kaizhou XieCollege of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, China.
Jinyu WangCollege of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, China.
Genxi ZhangCollege of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, China.
Yangzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chicken is widely favored by consumers because of some unique features. The leg muscles occupy an important position in the market. However, the specific mechanism for regulating muscle growth speed is not clear. In this experiment, we used Jinghai yellow chickens with different body weights at 300 days as research subjects. The chickens were divided into fast- and slow-growing groups, and we collected leg muscles after slaughtering for use in RNA-seq. After comparing the two groups, 87 differentially expressed genes (DEGs) were identified (fold change ≥ 2 and FDR < 0.05). The fast-growing group had 42 up-regulated genes and 45 down-regulated genes among these DEGs compared to the slow-growing group. Six items were significantly enriched in the biological process: embryo development ending in birth or egg hatching, chordate embryonic development, embryonic skeletal system development, and embryo development as well as responses to ketones and the sulfur compound biosynthetic process. Two significantly enriched pathways were found in the KEGG pathway analysis (P-value < 0.05): the insulin signaling pathway and the adipocytokine signaling pathway. This study provides a theoretical basis for the molecular mechanism of chicken growth and for improving the production of Jinghai yellow chicken.

Indexed as

Gene Expression ProfilingGene Expression Regulation, DevelopmentalAnimalsChickensCluster AnalysisExtremitiesGene OntologyMuscle, SkeletalOrgan SizeReproducibility of Results

Identifiers

PMID30403718
PMCPMC6221307
OpenAlexW2900325472

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.