Evidence map›Paper›PMID 30446876›Full record

ArticleFunctional & integrative genomics2019

Hotspots in the genomic architecture of field drought responses in wheat as breeding targets.

Sergio Gálvez, Rosa Mérida-García, Carlos Camino, Philippa Borrill, Michael Abrouk, Ricardo H Ramírez-González, Sezgi Biyiklioglu, Francisco Amil-Ruiz, IWGSC, Gabriel Dorado and 6 more

Abstract read
In one paragraph

Article in Functional & integrative genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Bioinformatics advances · 2022
    Article
  6. Capturing Wheat Phenotypes at the Genome Level.Frontiers in plant science · 2022
    Review
  7. Article
  8. Article
  9. Article
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  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. MicroRNAome Profile ofInternational journal of molecular sciences · 2019
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Sergio GálvezDepartamento de Lenguajes y Ciencias de la Computación, ETSI Informática, Campus de Teatinos, Universidad de Málaga, 29071, Málaga, Spain. galvez@uma.es.
Rosa Mérida-GarcíaInstituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Alameda del Obispo s/n, 14004, Córdoba, Spain.
Carlos CaminoInstituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Alameda del Obispo s/n, 14004, Córdoba, Spain.
Philippa BorrillJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Michael AbroukInstitute of Experimental Botany, Centre of Plant Structural and Functional Genomics, CZ-78371, Olomouc, Czech Republic.
Ricardo H Ramírez-GonzálezJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Sezgi BiyikliogluDepartment of Plant Sciences and Plant Pathology, Montana State University, Bozeman, MT, 59717-3150, USA.
Francisco Amil-RuizBioinformatics Unit, SCAI, Campus Rabanales, University of Córdoba, 14014, Córdoba, Spain.
IWGSC
Gabriel DoradoDepartamento de Bioquímica y Biología Molecular, Campus de Excelencia Internacional Agroalimentario (ceiA3), Universidad de Córdoba, Campus Rabanales C6-1-E17, 14071, Córdoba, Spain.
Hikmet BudakDepartment of Plant Sciences and Plant Pathology, Montana State University, Bozeman, MT, 59717-3150, USA.
Victoria Gonzalez-DugoInstituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Alameda del Obispo s/n, 14004, Córdoba, Spain.
Pablo J Zarco-TejadaInstituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Alameda del Obispo s/n, 14004, Córdoba, Spain. pablo.zarco@csic.es.
Rudi AppelsVeterinary and Agricultural Sciences, University of Melbourne, Gratten St, Parkville, Victoria, 3010, Australia.
Cristobal UauyJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK. Cristobal.Uauy@jic.ac.uk.
Pilar HernandezInstituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Alameda del Obispo s/n, 14004, Córdoba, Spain. phernandez@ias.csic.es.ORCID http://orcid.org/0000-0001-5166-4454

Funding

REGULATION OF GRANULOPOIESISR01CA015237 · NCI · WESTERN PENNSYLVANIA HOSPITAL · PI SHADDUCK, RICHARD K · 1985 to 1993
–
Biotechnology and Biological Sciences Research Council BB/M014045/1Biotechnology and Biological Sciences Research Council (BB/P016855/1), GEN (BB/P013511/1)Comisión Interministerial de Ciencia y Tecnología AGL2016-77149-C2-1-PComisión Interministerial de Ciencia y Tecnología BIO2011-15237-EComisión Interministerial de Ciencia y Tecnología CGL2016-79790-PComisión Interministerial de Ciencia y Tecnología Salvador-MadariagaConsejería de Economía, Innovación, Ciencia y Empleo, Junta de Andalucía P12-AGR-0482University of Montana --
6 · The paper itself

Abstract

Wheat can adapt to most agricultural conditions across temperate regions. This success is the result of phenotypic plasticity conferred by a large and complex genome composed of three homoeologous genomes (A, B, and D). Although drought is a major cause of yield and quality loss in wheat, the adaptive mechanisms and gene networks underlying drought responses in the field remain largely unknown. Here, we addressed this by utilizing an interdisciplinary approach involving field water status phenotyping, sampling, and gene expression analyses. Overall, changes at the transcriptional level were reflected in plant spectral traits amenable to field-level physiological measurements, although changes in photosynthesis-related pathways were found likely to be under more complex post-transcriptional control. Examining homoeologous genes with a 1:1:1 relationship across the A, B, and D genomes (triads), we revealed a complex genomic architecture for drought responses under field conditions, involving gene homoeolog specialization, multiple gene clusters, gene families, miRNAs, and transcription factors coordinating these responses. Our results provide a new focus for genomics-assisted breeding of drought-tolerant wheat cultivars.

Indexed as

DroughtsGenome, PlantStress, PhysiologicalPlant BreedingQuantitative Trait LociTranscriptomeTriticumField drought tolerancePlant spectral traitsTranscriptomics

Identifiers

PMID30446876
PMCPMC6394720

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.