Evidence map›Paper›PMID 30451848›Full record

ArticleNature communications2018

Growth factor gene IGF1 is associated with bill size in the black-bellied seedcracker Pyrenestes ostrinus.

Bridgett M vonHoldt, Rebecca Y Kartzinel, Christian D Huber, Vinh Le Underwood, Ying Zhen, Kristen Ruegg, Kirk E Lohmueller, Thomas B Smith

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
7.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Climate change and its effects on body size and shape: the role of endocrine mechanisms.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  3. Article
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Bridgett M vonHoldtEcology and Evolutionary Biology, Princeton University, Princeton, NJ, 08544, USA. vonHoldt@princeton.edu.
Rebecca Y KartzinelDepartment of Ecology and Evolutionary Biology, Brown University, Providence, RI, 02912, USA.
Christian D HuberEcology and Evolutionary Biology, University of California, Los Angeles, CA, 90095, USA.
Vinh Le UnderwoodEcology and Evolutionary Biology, University of California, Los Angeles, CA, 90095, USA.
Ying ZhenEcology and Evolutionary Biology, University of California, Los Angeles, CA, 90095, USA.
Kristen RueggCenter for Tropical Research, Institute for the Environment, University of California, Los Angeles, CA, 90095, USA.
Kirk E LohmuellerEcology and Evolutionary Biology, University of California, Los Angeles, CA, 90095, USA.
Thomas B SmithEcology and Evolutionary Biology, University of California, Los Angeles, CA, 90095, USA. tbsmith@ucla.edu.
University of California, Los Angeles · USOklahoma State University Center for Health Sciences · USBrown University · USPrinceton University · US

Funding

Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
NIH HHS S10 OD018174
6 · The paper itself

Abstract

Pyrenestes finches are unique among birds in showing a non-sex-determined polymorphism in bill size and are considered a textbook example of disruptive selection. Morphs breed randomly with respect to bill size, and differ in diet and feeding performance relative to seed hardness. Previous breeding experiments are consistent with the polymorphism being controlled by a single genetic factor. Here, we use genome-wide pooled sequencing to explore the underlying genetic basis of bill morphology and identify a single candidate region. Targeted resequencing reveals extensive linkage disequilibrium across a 300 Kb region containing the insulin-like growth factor 1 (IGF1) gene, with a single 5-million-year-old haplotype associating with phenotypic dominance of the large-billed morph. We find no genetic similarities controlling bill size in the well-studied Darwin's finches (Geospiza). Our results show how a single genetic factor may control bill size and provide a foundation for future studies to examine this phenomenon within and among avian species.

Indexed as

Biological EvolutionPolymorphism, GeneticAnimalsBeakEatingFinchesGene ExpressionHaplotypesHardnessInsulin-Like Growth Factor ILinkage DisequilibriumOrgan SizePhenotypeSeedsSelection, GeneticWhole Genome SequencingInsulin-Like Growth Factor I

Identifiers

PMID30451848
PMCPMC6242981
OpenAlexW2901813648

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.