Evidence map›Paper›PMID 30455320›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Single nucleotide polymorphisms alter kinase anchoring and the subcellular targeting of A-kinase anchoring proteins.

F Donelson Smith, Mitchell H Omar, Patrick J Nygren, Joseph Soughayer, Naoto Hoshi, Ho-Tak Lau, Calvin G Snyder, Tess C Branon, Debapriya Ghosh, Lorene K Langeberg and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. cAMP signaling: a remarkably regional affair.Trends in biochemical sciences · 2024
    Review
  7. The focal adhesion protein talin is a mechanically gated A-kinase anchoring protein.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. KAmerican journal of physiology. Cell physiology · 2022
    Review
  13. Review
  14. Article
  15. The optimal docking strength for reversibly tethered kinases.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Review
  17. Review
  18. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

F Donelson SmithDepartment of Pharmacology, University of Washington, Seattle, WA 98195.ORCID 0000-0002-8080-7589
Mitchell H OmarDepartment of Pharmacology, University of Washington, Seattle, WA 98195.
Patrick J NygrenDepartment of Pharmacology, University of Washington, Seattle, WA 98195.
Joseph SoughayerDepartment of Pharmacology, University of Washington, Seattle, WA 98195.
Naoto HoshiDepartment of Pharmacology, University of California, Irvine, CA 92697.
Ho-Tak LauDepartment of Pharmacology, University of Washington, Seattle, WA 98195.
Calvin G SnyderDepartment of Pharmacology, University of Washington, Seattle, WA 98195.
Tess C BranonDepartment of Genetics, Stanford University, Stanford, CA 94305.
Debapriya GhoshDepartment of Pharmacology, University of California, Davis, CA 95616.
Lorene K LangebergDepartment of Pharmacology, University of Washington, Seattle, WA 98195.
Alice Y TingDepartment of Genetics, Stanford University, Stanford, CA 94305.
Luis F SantanaDepartment of Physiology & Membrane Biology, University of California, Davis, CA 95616.ORCID 0000-0002-4297-8029
Shao-En OngDepartment of Pharmacology, University of Washington, Seattle, WA 98195.
Manuel F NavedoDepartment of Pharmacology, University of California, Davis, CA 95616.
John D ScottDepartment of Pharmacology, University of Washington, Seattle, WA 98195; scottjdw@uw.edu.ORCID 0000-0002-0367-8146
University of Washington · USUniversity of California, Davis · USStanford University · USUniversity of California, Irvine · US

Funding

Pharmacological Sciences SupplementT32GM007750 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 1985 to 2023
$12.6M
Diabetes, Obesity and Metabolism Training ProgramT32DK007247 · NIDDK · UNIVERSITY OF WASHINGTON · PI GREGORY J MORTON, KRISTINA Marie UTZSCHNEIDER · 1986 to 2026
$10.0M
Coupling of Vascular Cav1.2 Channels In Health & DiseaseR01HL121059 · NHLBI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI NAVEDO, MANUEL F · 2015 to 2024
$4.5M
Defective PKA Signaling in Cushing's SyndromeR01DK119192 · NIDDK · UNIVERSITY OF WASHINGTON · PI John D Scott · 2018 to 2026
$4.4M
Calcium Sparklets-Induced Vascular Dysfunction During DiabetesR01HL098200 · NHLBI · UNIVERSITY OF WASHINGTON · PI NAVEDO, MANUEL F · 2010 to 2019
$3.5M
Local Signaling in Diabetic ComorbiditiesR01DK105542 · NIDDK · UNIVERSITY OF WASHINGTON · PI SCOTT, JOHN D · 2015 to 2018
$1.4M
A NanoLC-Orbitrap Tribrid Instrument for Comprehensive Proteomics AnalysesS10OD021502 · OD · UNIVERSITY OF WASHINGTON · PI ONG, SHAO-EN · 2017 to 2017
$906k
NHLBI NIH HHS R01 HL098200NHLBI NIH HHS R01 HL121059NIDDK NIH HHS R01 DK105542NIDDK NIH HHS R01 DK119192NIDDK NIH HHS T32 DK007247NIGMS NIH HHS T32 GM007750NIH HHS S10 OD021502
6 · The paper itself

Abstract

A-kinase anchoring proteins (AKAPs) shape second-messenger signaling responses by constraining protein kinase A (PKA) at precise intracellular locations. A defining feature of AKAPs is a helical region that binds to regulatory subunits (RII) of PKA. Mining patient-derived databases has identified 42 nonsynonymous SNPs in the PKA-anchoring helices of five AKAPs. Solid-phase RII binding assays confirmed that 21 of these amino acid substitutions disrupt PKA anchoring. The most deleterious side-chain modifications are situated toward C-termini of AKAP helices. More extensive analysis was conducted on a valine-to-methionine variant in the PKA-anchoring helix of AKAP18. Molecular modeling indicates that additional density provided by methionine at position 282 in the AKAP18γ isoform deflects the pitch of the helical anchoring surface outward by 6.6°. Fluorescence polarization measurements show that this subtle topological change reduces RII-binding affinity 8.8-fold and impairs cAMP responsive potentiation of L-type Ca

Indexed as

A Kinase Anchor ProteinsCyclic AMP-Dependent Protein KinasesGene Expression Regulation, EnzymologicGenome-Wide Association StudyHumansMembrane ProteinsModels, MolecularPolymorphism, Single NucleotideProtein BindingProtein ConformationProtein IsoformsProtein TransportAKAP7 protein, humanA Kinase Anchor ProteinsCyclic AMP-Dependent Protein KinasesMembrane ProteinsProtein IsoformsAKAPskinase anchoringnucleusPKAproximity labeling

Identifiers

PMID30455320
PMCPMC6298107
OpenAlexW2900839334

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.