Evidence map›Paper›PMID 30571168›Full record

ArticleArteriosclerosis, thrombosis, and vascular biology2018

Distinct Proteomic Signatures in 16 HDL (High-Density Lipoprotein) Subspecies.

Jeremy D Furtado, Rain Yamamoto, John T Melchior, Allison B Andraski, Maria Gamez-Guerrero, Patrick Mulcahy, Zeling He, Tianxi Cai, W Sean Davidson, Frank M Sacks

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Arteriosclerosis, thrombosis, and vascular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 97 citations in OpenAlex.

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  20. Thermal Remodeling of Human HDL Particles Reveals Diverse Subspecies.Journal of the American Society for Mass Spectrometry · 2024
    Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Jeremy D FurtadoFrom the Department of Nutrition (J.D.F., R.Y., A.B.A., M.G.-G., P.M., F.M.S.), Harvard T. H. Chan School of Public Health, Boston, MA.
Rain YamamotoFrom the Department of Nutrition (J.D.F., R.Y., A.B.A., M.G.-G., P.M., F.M.S.), Harvard T. H. Chan School of Public Health, Boston, MA.
John T MelchiorDepartment of Pathology and Laboratory Medicine, University of Cincinnati, OH (J.T.M., W.S.D.).
Allison B AndraskiFrom the Department of Nutrition (J.D.F., R.Y., A.B.A., M.G.-G., P.M., F.M.S.), Harvard T. H. Chan School of Public Health, Boston, MA.
Maria Gamez-GuerreroFrom the Department of Nutrition (J.D.F., R.Y., A.B.A., M.G.-G., P.M., F.M.S.), Harvard T. H. Chan School of Public Health, Boston, MA.
Patrick MulcahyFrom the Department of Nutrition (J.D.F., R.Y., A.B.A., M.G.-G., P.M., F.M.S.), Harvard T. H. Chan School of Public Health, Boston, MA.
Zeling HeDepartment of Biostatistics (Z.H., T.C.), Harvard T. H. Chan School of Public Health, Boston, MA.
Tianxi CaiDepartment of Biostatistics (Z.H., T.C.), Harvard T. H. Chan School of Public Health, Boston, MA.
W Sean DavidsonDepartment of Pathology and Laboratory Medicine, University of Cincinnati, OH (J.T.M., W.S.D.).
Frank M SacksFrom the Department of Nutrition (J.D.F., R.Y., A.B.A., M.G.-G., P.M., F.M.S.), Harvard T. H. Chan School of Public Health, Boston, MA.
Harvard University · USUniversity of Cincinnati · USUnited Nations · US

Funding

Dietary Fat and HDL MetabolismR01HL095964 · NHLBI · HARVARD SCHOOL OF PUBLIC HEALTH · PI SACKS, FRANK M · 2010 to 2014
$3.3M
HDL Proteins and Coronary Heart DiseaseR01HL123917 · NHLBI · HARVARD SCHOOL OF PUBLIC HEALTH · PI SACKS, FRANK M · 2014 to 2017
$3.2M
Enhanced proteomics capabilities for quantitation of proteins with a triple quadS10RR027015 · NCRR · UNIVERSITY OF CINCINNATI · PI GREIS, KENNETH DONALD · 2010 to 2010
$426k
NCRR NIH HHS S10 RR027015NHLBI NIH HHS R01 HL095964NHLBI NIH HHS R01 HL123917
6 · The paper itself

Abstract

Objective- HDL (high-density lipoprotein) in plasma is a heterogeneous group of lipoproteins typically containing apo AI as the principal protein. Most HDLs contain additional proteins from a palate of nearly 100 HDL-associated polypeptides. We hypothesized that some of these proteins define distinct and stable apo AI HDL subspecies with unique proteomes that drive function and associations with disease. Approach and Results- We produced 17 plasma pools from 80 normolipidemic human participants (32 men, 48 women; aged 21-66 years). Using immunoaffinity isolation techniques, we isolated apo AI containing species from plasma and then used antibodies to 16 additional HDL protein components to isolate compositional subspecies. We characterized previously described HDL subspecies containing apo AII, apo CIII, and apo E; and 13 novel HDL subspecies defined by presence of apo AIV, apo CI, apo CII, apo J, α-1-antitrypsin, α-2-macroglobulin, plasminogen, fibrinogen, ceruloplasmin, haptoglobin, paraoxonase-1, apo LI, or complement C3. The novel species ranged in abundance from 1% to 18% of total plasma apo AI. Their concentrations were stable over time as demonstrated by intraclass correlations in repeated sampling from the same participants over 3 to 24 months (0.33-0.86; mean 0.62). Some proteomes of the subspecies relative to total HDL were strongly correlated, often among subspecies defined by similar functions: lipid metabolism, hemostasis, antioxidant, or anti-inflammatory. Permutation analysis showed that the proteomes of 12 of the 16 subspecies differed significantly from that of total HDL. Conclusions- Taken together, correlation and permutation analyses support speciation of HDL. Functional studies of these novel subspecies and determination of their relation to diseases may provide new avenues to understand the HDL system of lipoproteins.

Indexed as

AdultAgedAntioxidantsApolipoprotein A-IEnzyme-Linked Immunosorbent AssayFemaleHemostasisHumansInflammationLipid MetabolismLipoproteins, HDLMaleMiddle AgedProtein BindingProtein StabilityProteomicsAntioxidantsAPOA1 protein, humanApolipoprotein A-ILipoproteins, HDLapolipoproteinscardiovascular diseasesenzyme-linked immunosorbent assayhumanslipoproteins, HDLpeptidesproteomics

Identifiers

PMID30571168
PMCPMC6309805
OpenAlexW2897013224

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.