Evidence map›Paper›PMID 30578281›Full record

ArticleBlood advances2018

A locus on chromosome 5 shows African ancestry-limited association with alloimmunization in sickle cell disease.

Lesedi M Williams, Zhihua Qi, Ken Batai, Stanley Hooker, Nancy J Hall, Roberto F Machado, Alice Chen, Sally Campbell-Lee, Yongtao Guan, Rick Kittles and 1 more

Open access · goldAbstract read
In one paragraph

Article in Blood advances, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Lesedi M WilliamsDepartment of Biological Sciences, University of Botswana, Gaborone, Botswana.
Zhihua QiDepartment of Molecular and Human Genetics and.
Ken BataiCollege of Medicine, University of Arizona, Tucson, AZ.
Stanley HookerDivision of Health Equities, Department of Population Sciences, City of Hope, Duarte, CA.
Nancy J HallUS Department of Agriculture/Agricultural Research Service Children's Nutrition Research Center, Baylor College of Medicine, Houston, TX.
Roberto F MachadoCollege of Medicine, University of Illinois at Chicago, Chicago, IL; and.
Alice ChenGulf Coast Pathology Associates, Houston, TX.
Sally Campbell-LeeCollege of Medicine, University of Illinois at Chicago, Chicago, IL; and.
Yongtao GuanDepartment of Molecular and Human Genetics and.
Rick KittlesDivision of Health Equities, Department of Population Sciences, City of Hope, Duarte, CA.
Neil A HanchardDepartment of Molecular and Human Genetics and.
Agricultural Research Service · USChildren's Nutrition Research Center at Baylor College of Medicine · USCity of Hope · USUniversity of Illinois Chicago · USUniversity of Arizona · USUniversity of Botswana · BW

Funding

Phenotyping and BioarchivingU54AI110398 · NIAID · BOTSWANA BAYLOR CHILD/CLINCAL CTR/EXCELL · PI MATSHABA, MOGOMOTSI SANDY · 2014 to 2021
$8.9M
Vascular Targeting Genomic & Genetic Strategies for Acute Chest SyndromeR01HL111656 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI Roberto F. Machado · 2013 to 2026
$7.9M
Incorporating Local Haplotype Sharing to Detect Genetic AssociationsR01HG008157 · NHGRI · DUKE UNIVERSITY · PI GUAN, YONGTAO · 2015 to 2018
$1.5M
NHGRI NIH HHS R01 HG008157NHLBI NIH HHS R01 HL111656NIAID NIH HHS U54 AI110398
6 · The paper itself

Abstract

Red blood cell (RBC) transfusion remains a critical therapeutic intervention in sickle cell disease (SCD); however, the apparent propensity of some patients to regularly develop RBC alloantibodies after transfusion presents a significant challenge to finding compatible blood for so-called alloimmunization responders. Predisposing genetic loci have long been thought to contribute to the responder phenomenon, but to date, no definitive loci have been identified. We undertook a genome-wide association study of alloimmunization responder status in 267 SCD multiple transfusion recipients, using genetic estimates of ancestral admixture to bolster our findings. Analyses revealed single nucleotide polymorphisms (SNPs) on chromosomes 2 and 5 approaching genome-wide significance (minimum

Indexed as

AllelesAnemia, Sickle CellBlack or African AmericanChromosomes, Human, Pair 2Chromosomes, Human, Pair 5Genetic LociGenome-Wide Association StudyGenotypeHaplotypesHumansIsoantibodiesPolymorphism, Single NucleotideReceptors, Adrenergic, alpha-1RNA, Long NoncodingADRA1B protein, humanIsoantibodieslinc0597 long non-coding RNA, humanReceptors, Adrenergic, alpha-1RNA, Long Noncoding

Identifiers

PMID30578281
PMCPMC6306880
OpenAlexW2905930450

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.