Evidence map›Paper›PMID 30626673›Full record

ArticleJournal of virology2019

Examination and Reconstruction of Three Ancient Endogenous Parvovirus Capsid Protein Gene Remnants Found in Rodent Genomes.

Heather M Callaway, Suriyasri Subramanian, Christian A Urbina, Karen N Barnard, Robert A Dick, Carol M Bator, Susan L Hafenstein, Robert J Gifford, Colin R Parrish

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Viral Phrenology.Viruses · 2021
    Article
  9. Mapping the evolution of bornaviruses across geological timescales.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Article
  11. Viruses · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Heather M CallawayBaker Institute for Animal Health, Department of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA.
Suriyasri SubramanianDepartment of Medicine, Penn State University College of Medicine, Hershey, Pennsylvania, USA.
Christian A UrbinaBaker Institute for Animal Health, Department of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA.
Karen N BarnardBaker Institute for Animal Health, Department of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA.
Robert A DickDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, USA.
Carol M BatorDepartment of Medicine, Penn State University College of Medicine, Hershey, Pennsylvania, USA.
Susan L HafensteinDepartment of Medicine, Penn State University College of Medicine, Hershey, Pennsylvania, USA.
Robert J GiffordMRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom.ORCID 0000-0003-4028-9884
Colin R ParrishBaker Institute for Animal Health, Department of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA crp3@cornell.edu.ORCID 0000-0002-1836-6655
Cornell University · USPennsylvania State University · USMRC University of Glasgow Centre for Virus Research · GB

Funding

The Evolutionary and Biological Bases of Host Switching in VirusesR01GM080533 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI PARRISH, COLIN R. · 2007 to 2019
$4.1M
Structural Controls of Functional Receptor and Antibody Binding to Viral Capsids.R01AI092571 · NIAID · CORNELL UNIVERSITY · PI PARRISH, COLIN R. · 2011 to 2021
$4.0M
Medical Research Council MC_UU_12014/10Medical Research Council MC_UU_12014/12NIAID NIH HHS R01 AI092571NIGMS NIH HHS R01 GM080533
6 · The paper itself

Abstract

Parvovirus-derived endogenous viral elements (EVEs) have been found in the genomes of many different animal species, resulting from integration events that may have occurred from more than 50 million years ago to much more recently. Here, we further investigate the properties of autonomous parvovirus EVEs and describe their relationships to contemporary viruses. While we did not find any intact capsid protein open reading frames in the integrated viral sequences, we examined three EVEs that were repaired to form full-length sequences with relatively few changes. These sequences were found in the genomes of

Indexed as

AnimalsCapsidCapsid ProteinsCatsCell LineDogsGenomeHEK293 CellsHumansMiceParvoviridae InfectionsParvovirusRatsRodentiaSf9 CellsSwineCapsid Proteinscapsidendogenous viral elementparvovirus

Identifiers

PMID30626673
PMCPMC6401472
OpenAlexW2908920579

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.