Evidence map›Paper›PMID 30693671›Full record

ArticleMolecular genetics & genomic medicine2019

Protein informatics combined with multiple data sources enriches the clinical characterization of novel TRPV4 variant causing an intermediate skeletal dysplasia.

Stephanie L Hines, John E Richter, Ahmed N Mohammad, Jain Mahim, Paldeep S Atwal, Thomas R Caulfield

Open access · goldAbstract readCase Reports
In one paragraph

Article in Molecular genetics & genomic medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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  7. Genomic Observations of a Rare/PathogenicMedicina (Kaunas, Lithuania) · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Stephanie L HinesDepartment of Clinical Genomics, Mayo Clinic, Jacksonville, Florida.
John E RichterDepartment of Clinical Genomics, Mayo Clinic, Jacksonville, Florida.
Ahmed N MohammadDepartment of Clinical Genomics, Mayo Clinic, Jacksonville, Florida.
Jain MahimDepartment of Pediatrics, Johns Hopkins School of Medicine, Baltimore, Maryland.
Paldeep S AtwalAtwal Clinic, Jacksonville, Florida.
Thomas R CaulfieldCenter for Individualized Medicine, Mayo Clinic, Jacksonville, Florida.ORCID 0000-0002-1055-3069
Jacksonville College · USJohns Hopkins University · USNemours Children's Clinic · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTransient receptor potential cation channel subfamily V member 4 (TRPV4) is an ion channel permeable to Ca

methodsNewly characterized, suspected pathogenic variant in TRPV4 was analyzed using protein informatics and personalized protein-level molecular studies, genomic exome analysis, and clinical study.

resultsThis statement is demonstrated in the family of our proband, a 47-year-old female having the novel c.2401A>G (p.K801E) variant of TRPV4. We discuss the common symptoms between the proband, her father, and her daughter, and compare her phenotype to known TRPV4-associated skeletal dysplasias.

conclusionsProtein informatics and molecular modeling are used to confirm the pathogenicity of the unique TRPV4 variant found in this family. Multiple data were combined in a comprehensive manner to give complete overall perspective on the patient disease and prognosis.

Indexed as

Molecular Dynamics SimulationMutation, MissensePhenotypeFemaleHumansLoss of Function MutationMiddle AgedOsteochondrodysplasiasPedigreeTRPV Cation ChannelsTRPV4 protein, humanTRPV Cation ChannelsKozlowski typeMaroteaux typeskeletal dysplasiaspondyloepiphyseal dysplasiaspondylometaphyseal dysplasiatransient receptor potential cation channel subfamily V member 4 (TRPV4)

Identifiers

PMID30693671
PMCPMC6418443
OpenAlexW2912389619

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.