Evidence map›Paper›PMID 30696008›Full record

ArticleInternational journal of molecular sciences2019

Global Transcriptional Insights of Pollen-Pistil Interactions Commencing Self-Incompatibility and Fertilization in Tea [

Romit Seth, Abhishek Bhandawat, Rajni Parmar, Pradeep Singh, Sanjay Kumar, Ram Kumar Sharma

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 40 citations in OpenAlex.

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  16. Functional Analyses of Flavonol Synthase Genes FromFrontiers in plant science · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Romit SethBiotechnology Department, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh 176061, India. romit_seth18@yahoo.com.ORCID 0000-0003-3472-1394
Abhishek BhandawatBiotechnology Department, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh 176061, India. abhishek.bhandawat@gmail.com.ORCID 0000-0002-3840-6116
Rajni ParmarBiotechnology Department, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh 176061, India. rajni.parmar03@gmail.com.
Pradeep SinghBiotechnology Department, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh 176061, India. ps111186@gmail.com.ORCID 0000-0003-3614-2708
Sanjay KumarBiotechnology Department, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh 176061, India. sanjayplp1@gmail.com.
Ram Kumar SharmaBiotechnology Department, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh 176061, India. rksharma.ihbt@gmail.com.ORCID 0000-0002-1167-9499
Institute of Himalayan Bioresource Technology · INGuru Nanak Dev University · IN

Funding

Council of Scientific and Industrial Research PLOMICS
6 · The paper itself

Abstract

This study explicates molecular insights commencing Self-Incompatibility (SI) and CC (cross-compatibility/fertilization) in self (SP) and cross (CP) pollinated pistils of tea. The fluorescence microscopy analysis revealed ceased/deviated pollen tubes in SP, while successful fertilization occurred in CP at 48 HAP. Global transcriptome sequencing of SP and CP pistils generated 109.7 million reads with overall 77.9% mapping rate to draft tea genome. Furthermore, concatenated de novo assembly resulted into 48,163 transcripts. Functional annotations and enrichment analysis (KEGG & GO) resulted into 3793 differentially expressed genes (DEGs). Among these, de novo and reference-based expression analysis identified 195 DEGs involved in pollen-pistil interaction. Interestingly, the presence of 182 genes [PT germination & elongation (67), S-locus (11), fertilization (43), disease resistance protein (30) and abscission (31)] in a major hub of the protein-protein interactome network suggests a complex signaling cascade commencing SI/CC. Furthermore, tissue-specific qRT-PCR analysis affirmed the localized expression of 42 DE putative key candidates in stigma-style and ovary, and suggested that LSI initiated in style and was sustained up to ovary with the active involvement of

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantTranscription, GeneticCamellia sinensisFertilizationGene OntologyMolecular Sequence AnnotationOrgan SpecificityPollen TubePollinationProtein Interaction MapsReproducibility of ResultsRNA, MessengerSelf-Incompatibility in Flowering PlantsSequence Analysis, RNARNA, Messengerfertilizationgene expressioninteractomemicroscopyself-incompatibilityteatranscriptome

Identifiers

PMID30696008
PMCPMC6387076
OpenAlexW2913789327

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.