Evidence map›Paper›PMID 30726935›Full record

SynthesisJournal of the American Medical Informatics Association : JAMIA2019

Natural language processing of symptoms documented in free-text narratives of electronic health records: a systematic review.

Theresa A Koleck, Caitlin Dreisbach, Philip E Bourne, Suzanne Bakken

Abstract readSystematic Review
In one paragraph

Synthesis in Journal of the American Medical Informatics Association : JAMIA, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 191 papers, 11 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
191citing papers in PubMed, 11 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

191 citing papers in PubMed, 11 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Use of unstructured text in prognostic clinical prediction models: a systematic review.Journal of the American Medical Informatics Association : JAMIA · 2022
    Pooled it
  6. Pooled it
  7. Pooled it
  8. Pooled it
  9. Pooled it
  10. Pooled it
  11. Pooled it
  12. Article
  13. Article
  14. Review
  15. Using large language models to identify prediagnostic clinical features of ovarian cancer from healthcare records: a population-based case-control study.The British journal of general practice : the journal of the Royal College of General Practitioners · 2026
    Article
  16. Review
  17. Review
  18. Observational
  19. Article
  20. Article

131 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Theresa A KoleckSchool of Nursing, Columbia University, New York, New York, USA.
Caitlin DreisbachSchool of Nursing, University of Virginia, Charlottesville, Virginia, USA.
Philip E BourneData Science Institute, University of Virginia, Charlottesville, Virginia, USA.
Suzanne BakkenSchool of Nursing, Columbia University, New York, New York, USA.

Funding

Reducing Health Disparities Through Informatics - Genomics SupplementT32NR007969 · NINR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SUZANNE BAKKEN, Rebecca Schnall · 2002 to 2026
$7.9M
Reaching Communities through the Design of Information Visualizations (ReDIVis) Toolbox to Address COVID-19 Vaccine Hesitancy and Uptake.P30NR016587 · NINR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BAKKEN, SUZANNE, SMALDONE, ARLENE M · 2016 to 2022
$4.3M
Advancing Chronic Condition Symptom Cluster Science Through Use of Electronic Health Records and Data Science TechniquesK99NR017651 · NINR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KOLECK, THERESA ANN · 2018 to 2019
$180k
The influence of maternal obesity on microbial function and impaired glucose tolerance during pregnancyF31NR017821 · NINR · UNIVERSITY OF VIRGINIA · PI DREISBACH, CAITLIN · 2018 to 2019
$71k
NINR NIH HHS F31 NR017821NINR NIH HHS K99 NR017651NINR NIH HHS P30 NR016587NINR NIH HHS T32 NR007969
6 · The paper itself

Abstract

objectiveNatural language processing (NLP) of symptoms from electronic health records (EHRs) could contribute to the advancement of symptom science. We aim to synthesize the literature on the use of NLP to process or analyze symptom information documented in EHR free-text narratives. MATERIALS AND

methodsOur search of 1964 records from PubMed and EMBASE was narrowed to 27 eligible articles. Data related to the purpose, free-text corpus, patients, symptoms, NLP methodology, evaluation metrics, and quality indicators were extracted for each study.

resultsSymptom-related information was presented as a primary outcome in 14 studies. EHR narratives represented various inpatient and outpatient clinical specialties, with general, cardiology, and mental health occurring most frequently. Studies encompassed a wide variety of symptoms, including shortness of breath, pain, nausea, dizziness, disturbed sleep, constipation, and depressed mood. NLP approaches included previously developed NLP tools, classification methods, and manually curated rule-based processing. Only one-third (n = 9) of studies reported patient demographic characteristics. DISCUSSION: NLP is used to extract information from EHR free-text narratives written by a variety of healthcare providers on an expansive range of symptoms across diverse clinical specialties. The current focus of this field is on the development of methods to extract symptom information and the use of symptom information for disease classification tasks rather than the examination of symptoms themselves.

conclusionFuture NLP studies should concentrate on the investigation of symptoms and symptom documentation in EHR free-text narratives. Efforts should be undertaken to examine patient characteristics and make symptom-related NLP algorithms or pipelines and vocabularies openly available.

Indexed as

Electronic Health RecordsNatural Language ProcessingAlgorithmsDatabases, BibliographicData MiningHumansNarrationSymptom Assessmentelectronic health recordsnatural language processingreviewsigns and symptoms

Identifiers

PMID30726935
PMCPMC6657282

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.