Evidence map›Paper›PMID 30813944›Full record

ArticleNeural development2019

Zebrafish prdm12b acts independently of nkx6.1 repression to promote eng1b expression in the neural tube p1 domain.

Ozge Yildiz, Gerald B Downes, Charles G Sagerström

Open access · goldAbstract read
In one paragraph

Article in Neural development, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. TALE and Hox Transcription Factors Control Adult Behaviors in Zebrafish.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. PRDM12 in Health and Diseases.International journal of molecular sciences · 2021
    Review
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Ozge YildizDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, 364 Plantation St/LRB815, Worcester, MA, 01605, USA.
Gerald B DownesDepartment of Biology, University of Massachusetts, Amherst, MA, 01003, USA.
Charles G SagerströmDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, 364 Plantation St/LRB815, Worcester, MA, 01605, USA. charles.sagerstrom@umassmed.edu.ORCID 0000-0002-1509-5810
University of Massachusetts Chan Medical School · USUniversity of Massachusetts Amherst · US

Funding

MOLECULAR ANALYSIS OF HINDBRAIN FORMATIONR01NS038183 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Charles G Sagerstrom · 1999 to 2026
$8.3M
Molecular Analysis of Hindbrain FormationR56NS038183 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SAGERSTROM, CHARLES G · 2007 to 2007
$400k
NINDS NIH HHS R01 NS038183NINDS NIH HHS R56 NS038183
6 · The paper itself

Abstract

backgroundFunctioning of the adult nervous system depends on the establishment of neural circuits during embryogenesis. In vertebrates, neurons that make up motor circuits form in distinct domains along the dorsoventral axis of the neural tube. Each domain is characterized by a unique combination of transcription factors (TFs) that promote a specific fate, while repressing fates of adjacent domains. The prdm12 TF is required for the expression of eng1b and the generation of V1 interneurons in the p1 domain, but the details of its function remain unclear.

methodsWe used CRISPR/Cas9 to generate the first germline mutants for prdm12 and employed this resource, together with classical luciferase reporter assays and co-immunoprecipitation experiments, to study prdm12b function in zebrafish. We also generated germline mutants for bhlhe22 and nkx6.1 to examine how these TFs act with prdm12b to control p1 formation.

resultsWe find that prdm12b mutants lack eng1b expression in the p1 domain and also possess an abnormal touch-evoked escape response. Using luciferase reporter assays, we demonstrate that Prdm12b acts as a transcriptional repressor. We also show that the Bhlhe22 TF binds via the Prdm12b zinc finger domain to form a complex. However, bhlhe22 mutants display normal eng1b expression in the p1 domain. While prdm12 has been proposed to promote p1 fates by repressing expression of the nkx6.1 TF, we do not observe an expansion of the nkx6.1 domain upon loss of prdm12b function, nor is eng1b expression restored upon simultaneous loss of prdm12b and nkx6.1.

conclusionsWe conclude that prdm12b germline mutations produce a phenotype that is indistinguishable from that of morpholino-mediated loss of prdm12 function. In terms of prdm12b function, our results indicate that Prdm12b acts as transcriptional repressor and interacts with both EHMT2/G9a and Bhlhe22. However, bhlhe22 function is not required for eng1b expression in vivo, perhaps indicating that other bhlh genes can compensate during embryogenesis. Lastly, we do not find evidence for nkx6.1 and prdm12b acting as a repressive pair in formation of the p1 domain - suggesting that prdm12b is not solely required to repress non-p1 fates, but is specifically needed to promote p1 fates.

Indexed as

CRISPR-Cas SystemsGene Expression Regulation, DevelopmentalRenshaw CellsTranscription, GeneticAnimalsAnimals, Genetically ModifiedBehavior, AnimalBody PatterningDNA-Binding ProteinsGerm-Line MutationHEK293 CellsHumansLocomotionNerve Tissue ProteinsNeural TubeRhombencephalonDNA-Binding Proteinsen1b protein, zebrafishNerve Tissue Proteinsprdm12b protein, zebrafishTranscription FactorsZebrafish ProteinsCRISPRDorsoventral patterningHindbrainInterneuronLocomotionSpinal cordTranscription

Identifiers

PMID30813944
PMCPMC6391800
OpenAlexW2929742441

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.