Evidence map›Paper›PMID 30814336›Full record

Observational studyScience translational medicine2019

Shaping of infant B cell receptor repertoires by environmental factors and infectious disease.

Sandra C A Nielsen, Krishna M Roskin, Katherine J L Jackson, Shilpa A Joshi, Parastu Nejad, Ji-Yeun Lee, Lisa E Wagar, Tho D Pham, Ramona A Hoh, Khoa D Nguyen and 7 more

Abstract readObservational Study
In one paragraph

Observational study in Science translational medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 89 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Sandra C A NielsenDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0003-4746-8287
Krishna M RoskinDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-5864-5093
Katherine J L JacksonDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-9952-7069
Shilpa A JoshiDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-8014-1529
Parastu NejadDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Ji-Yeun LeeDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Lisa E WagarDepartment of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0001-5980-3586
Tho D PhamDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Ramona A HohDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-5116-1942
Khoa D NguyenDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0003-3149-3621
Hannah Y TsunemotoDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-1546-097X
Sonal B PatelDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Robert TibshiraniDepartment of Biomedical Data Sciences, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0003-0553-5090
Catherine LeyDepartment of Medicine, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-8424-7873
Mark M DavisDepartment of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0001-6868-657X
Julie ParsonnetDepartment of Medicine, Stanford University, Stanford, CA 94305, USA. sboyd1@stanford.edu parsonnt@stanford.edu.ORCID 0000-0001-7342-5366
Scott D BoydDepartment of Pathology, Stanford University, Stanford, CA 94305, USA. sboyd1@stanford.edu parsonnt@stanford.edu.ORCID 0000-0003-0963-044X
Stanford University · USCincinnati Children's Hospital Medical Center · USGarvan Institute of Medical Research · AUHoward Hughes Medical Institute · USStanford Blood Center · US

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Spectrum Stanford Center for clinical and Translational Research and EducationUL1TR001085 · NCATS · STANFORD UNIVERSITY · PI CULLEN, MARK RICHARD, GREENBERG, HARRY BERNARD · 2013 to 2017
$37.1M
Stanford Center for Clinical and Translational Education and Research (SCCTER)UL1UL1RR025744 · NCRR · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 2008 to 2011
$22.4M
Vaccination and infection: indicators of immunological health and responsivenessU19AI090019 · NIAID · STANFORD UNIVERSITY · PI DAVIS, MARK MORRIS · 2010 to 2015
$17.3M
Effects of aging on primary and secondary vaccine responses in a 15-year longitudinal cohortR01AI130398 · NIAID · STANFORD UNIVERSITY · PI BOYD, SCOTT DEXTER · 2017 to 2021
$4.0M
Childhood infection and prevention of obesityR01HD063142 · NICHD · STANFORD UNIVERSITY · PI PARSONNET, JULIE · 2009 to 2013
$3.7M
FUNCTIONAL ANALYSIS OF PATHOGENIC AND PROTECTIVE PEANUT ALLERGEN-SPECIFIC HUMAN ANTIBODIESR01AI125567 · NIAID · STANFORD UNIVERSITY · PI BOYD, SCOTT DEXTER · 2017 to 2022
$2.6M
Storage and recall of human B cell memory of influenza over tissues and timeR01AI127877 · NIAID · STANFORD UNIVERSITY · PI BOYD, SCOTT DEXTER · 2017 to 2021
$2.0M
NCATS NIH HHS UL1 TR001085NCRR NIH HHS UL1 RR025744NIAID NIH HHS R01 AI125567NIAID NIH HHS R01 AI127877NIAID NIH HHS R01 AI130398NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI090019NICHD NIH HHS R01 HD063142
6 · The paper itself

Abstract

Antigenic exposures at epithelial sites in infancy and early childhood are thought to influence the maturation of humoral immunity and modulate the risk of developing immunoglobulin E (IgE)-mediated allergic disease. How different kinds of environmental exposures influence B cell isotype switching to IgE, IgG, or IgA, and the somatic mutation maturation of these antibody pools, is not fully understood. We sequenced antibody repertoires in longitudinal blood samples in a birth cohort from infancy through the first 3 years of life and found that, whereas IgG and IgA show linear increases in mutational maturation with age, IgM and IgD mutations are more closely tied to pathogen exposure. IgE mutation frequencies are primarily increased in children with impaired skin barrier conditions such as eczema, suggesting that IgE affinity maturation could provide a mechanistic link between epithelial barrier failure and allergy development.

Indexed as

EnvironmentAdultAgingAntibodiesAntigensB-LymphocytesCarbanilidesChild, PreschoolClone CellsCommunicable DiseasesEczemaFamily CharacteristicsFemaleHumansHypersensitivityImmunoglobulin Class SwitchingAntibodiesAntigensCarbanilidesImmunoglobulin EImmunoglobulin Heavy ChainsImmunoglobulin Variable RegionReceptors, Antigen, B-CelltriclocarbanVaccines

Identifiers

PMID30814336
PMCPMC6733608
OpenAlexW2916326140

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.