Evidence map›Paper›PMID 30832206›Full record

ArticleMolecules (Basel, Switzerland)2019

Design, Synthesis and Biological Evaluation of Isoxazole-Based CK1 Inhibitors Modified with Chiral Pyrrolidine Scaffolds.

Andreas Luxenburger, Dorian Schmidt, Chiara Ianes, Christian Pichlo, Marc Krüger, Thorsten von Drathen, Elena Brunstein, Graeme J Gainsford, Ulrich Baumann, Uwe Knippschild and 1 more

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Andreas LuxenburgerFerrier Research Institute, Victoria University of Wellington, 69 Gracefield Rd, Lower Hutt 5040, New Zealand. Andreas.Luxenburger@vuw.ac.nz.
Dorian SchmidtInstitute of Pharmacy, Christian-Albrechts-University of Kiel, Gutenbergstraße 76, D-24116 Kiel, Germany. dschmidt@pharmazie.uni-kiel.de.
Chiara IanesDepartment of General and Visceral Surgery, Ulm University Hospital, Albert-Einstein-Allee 23, D-89081 Ulm, Germany. chiara.ianes@uni-ulm.de.
Christian PichloInstitute of Biochemistry, University of Cologne, Zuelpicher Str. 47, D-50674 Cologne, Germany. pichloc@uni-koeln.de.ORCID 0000-0002-3156-5667
Marc KrügerDepartment of General and Visceral Surgery, Ulm University Hospital, Albert-Einstein-Allee 23, D-89081 Ulm, Germany. marcm3012@googlemail.com.
Thorsten von DrathenInstitute of Pharmacy, Christian-Albrechts-University of Kiel, Gutenbergstraße 76, D-24116 Kiel, Germany. T.vonDrathen@gmx.de.
Elena BrunsteinInstitute of Biochemistry, University of Cologne, Zuelpicher Str. 47, D-50674 Cologne, Germany. Elena.Brunstein@uni-koeln.de.
Graeme J GainsfordFerrier Research Institute, Victoria University of Wellington, 69 Gracefield Rd, Lower Hutt 5040, New Zealand. gjgainsford@gmail.com.
Ulrich BaumannInstitute of Biochemistry, University of Cologne, Zuelpicher Str. 47, D-50674 Cologne, Germany. ubaumann@uni-koeln.de.
Uwe KnippschildDepartment of General and Visceral Surgery, Ulm University Hospital, Albert-Einstein-Allee 23, D-89081 Ulm, Germany. uwe.knippschild@uniklinik-ulm.de.
Christian PeiferInstitute of Pharmacy, Christian-Albrechts-University of Kiel, Gutenbergstraße 76, D-24116 Kiel, Germany. cpeifer@pharmazie.uni-kiel.de.

Funding

iNEXT initiative proposal 1859, EU program Horizon 2020 proposal 1859, EU program Horizon 2020NZP) and the Ministry of Business, Innovation and Employment MBIE; C08X0711
6 · The paper itself

Abstract

In this study, we report on the modification of a 3,4-diaryl-isoxazole-based CK1 inhibitor with chiral pyrrolidine scaffolds to develop potent and selective CK1 inhibitors. The pharmacophore of the lead structure was extended towards the ribose pocket of the adenosine triphosphate (ATP) binding site driven by structure-based drug design. For an upscale compatible multigram synthesis of the functionalized pyrrolidine scaffolds, we used a chiral pool synthetic route starting from methionine. Biological evaluation of key compounds in kinase and cellular assays revealed significant effects of the scaffolds towards activity and selectivity, however, the absolute configuration of the chiral moieties only exhibited a limited effect on inhibitory activity. X-ray crystallographic analysis of ligand-CK1δ complexes confirmed the expected binding mode of the 3,4-diaryl-isoxazole inhibitors. Surprisingly, the original compounds underwent spontaneous Pictet-Spengler cyclization with traces of formaldehyde during the co-crystallization process to form highly potent new ligands. Our data suggests chiral "ribose-like" pyrrolidine scaffolds have interesting potential for modifications of pharmacologically active compounds.

Indexed as

Drug DesignAdenosine TriphosphateBinding SitesCasein Kinase IdeltaCrystallography, X-RayEnzyme InhibitorsHumansIsoxazolesLigandsMultiprotein ComplexesPyrrolidinesStructure-Activity RelationshipAdenosine TriphosphateCasein Kinase IdeltaEnzyme InhibitorsIsoxazolesLigandsMultiprotein ComplexespyrrolidinePyrrolidines3,4-diaryl-isoxazolechiral kinase inhibitorsformerly known as casein kinase 1iminoribitolPictet-Spengler cyclizationprotein kinase CK1ribose pocket

Identifiers

PMID30832206
PMCPMC6429214

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.