Evidence map›Paper›PMID 30914682›Full record

ArticleScientific reports2019

Developing a blood-based gene mutation assay as a novel biomarker for oesophageal adenocarcinoma.

Hasan N Haboubi, Rachel L Lawrence, Benjamin Rees, Lisa Williams, James M Manson, Neam Al-Mossawi, Owen Bodger, Paul Griffiths, Catherine Thornton, Gareth J Jenkins

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. PIG-A gene mutation as a genotoxicity biomaker in polycyclic aromatic hydrocarbon-exposed barbecue workers.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2021
    Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Hasan N HaboubiCancer Biomarker Group, Institute of Life Sciences, Swansea University, Swansea, SA2 8PP, United Kingdom.
Rachel L LawrenceCancer Biomarker Group, Institute of Life Sciences, Swansea University, Swansea, SA2 8PP, United Kingdom. rachel.lawrence@swansea.ac.uk.
Benjamin ReesCancer Biomarker Group, Institute of Life Sciences, Swansea University, Swansea, SA2 8PP, United Kingdom.
Lisa WilliamsDepartment of Gastroenterology, Singleton Hospital, Swansea, SA2 8QA, United Kingdom.
James M MansonDepartment of Upper Gastrointestinal Surgery, Singleton Hospital, Swansea, SA2 8QA, United Kingdom.
Neam Al-MossawiDepartment of Dietetics, The Harley Street Clinic, London, W1G 8BJ, United Kingdom.
Owen BodgerDepartment of Biostatistics, Institute of Life Sciences, Swansea University, Swansea, SA2 8PP, United Kingdom.ORCID 0000-0002-4022-9964
Paul GriffithsDepartment of Histopathology, Singleton Hospital, Swansea, SA2 8QA, United Kingdom.
Catherine ThorntonDepartment of Immunology, Institute of Life Sciences, Swansea University, Swansea, SA2 8PP, United Kingdom.ORCID 0000-0002-5153-573X
Gareth J JenkinsCancer Biomarker Group, Institute of Life Sciences, Swansea University, Swansea, SA2 8PP, United Kingdom.ORCID 0000-0002-5437-8389
Swansea University · GBSingleton Hospital · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Phosphatidylinositol glycan class A (PIG-A) gene mutation assay phenotypically measures erythrocyte mutations, assessed here for their correlation to neoplastic progression in the gastro-oesophageal reflux disease (GORD)-Barrett's metaplasia (BM)-oesophageal adenocarcinoma (OAC) model. Endoscopy patients underwent venipuncture and erythrocytes fluorescently stained for glycosyl phosphatidylinositol (GPI)-anchored proteins; CD55 and CD59. Using flow cytometry, GPI-anchor negative erythrocytes (mutants) were scored and compared amongst groups. The study enlisted 200 patients and 137 healthy volunteers. OAC patients had a three-fold increase in erythrocyte mutant frequency (EMF) compared to GORD patients (p < 0.001) and healthy volunteers (p < 0.001). In OAC patients, higher EMF was associated with worsening tumour staging (p = 0.014), nodal involvement (p = 0.019) and metastatic disease (p = 0.008). Chemotherapy patients demonstrated EMF's over 19-times higher than GORD patients. Patients were further classified into groups containing those with non-neoplastic disease and those with high-grade dysplasia/cancer with 72.1% of cases correctly classified by high EMF. Within the non-neoplastic group, aspirin users had lower EMF (p = 0.001) and there was a positive correlation between body mass index (p = 0.03) and age (p < 0.001) and EMF. Smokers had EMF's over double that of non-smokers (p = 0.011). Results suggest this test could help detect OAC and may be a useful predictor of disease progression.

Indexed as

Biological AssayAdenocarcinomaAdultAgedAged, 80 and overBiomarkers, TumorErythrocytesEsophageal NeoplasmsFemaleHumansLife StyleMaleMembrane ProteinsMiddle AgedMutationMutation RateBiomarkers, TumorMembrane Proteinsphosphatidylinositol glycan-class A proteinPhosphatidylinositols

Identifiers

PMID30914682
PMCPMC6435702
OpenAlexW2923005108

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.