Evidence map›Paper›PMID 30917006›Full record

ArticleAmerican journal of respiratory cell and molecular biology2019

The Kinome of Human Alveolar Type II and Basal Cells, and Its Reprogramming in Lung Cancer.

Sonia M Leach, Jay Finigan, Vihas T Vasu, Rangnath Mishra, Moumita Ghosh, Daniel Foster, Robert Mason, Beata Kosmider, Eveline Farias Hesson, Jeffrey A Kern

Open access · greenAbstract readComparative Study
In one paragraph

Article in American journal of respiratory cell and molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 96% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Sonia M LeachDepartment of Biomedical Research.
Jay FiniganDepartment of Medicine, National Jewish Health, Denver, Colorado.
Vihas T VasuDepartment of Zoology, The Maharaja Sayajirao University of Baroda, Vadodara, Gujarat, India; and.ORCID 0000-0003-2275-2476
Rangnath MishraDepartment of Medicine, National Jewish Health, Denver, Colorado.ORCID 0000-0001-7118-7114
Moumita GhoshDepartment of Medicine, National Jewish Health, Denver, Colorado.
Daniel FosterDepartment of Medicine, National Jewish Health, Denver, Colorado.
Robert MasonDepartment of Medicine, National Jewish Health, Denver, Colorado.
Beata KosmiderDepartment of Physiology.
Eveline Farias HessonCenter for Genes, Environment and Health, and.
Jeffrey A KernDepartment of Medicine, National Jewish Health, Denver, Colorado.ORCID 0000-0001-9709-9622
National Jewish Health · USMaharaja Sayajirao University of Baroda · INTemple University · US

Funding

Tissue Bank and Biomarkers CoreP50CA058187 · NCI · UNIVERSITY OF COLORADO DENVER · PI NEMENOFF, RAPHAEL A. · 1992 to 2018
$43.8M
DJ-1 pathway impairment in alveolar type II cells in emphysema.R01HL118171 · NHLBI · TEMPLE UNIV OF THE COMMONWEALTH · PI KOSMIDER, BEATA · 2014 to 2018
$2.0M
ADAM17-NRG-1 Signaling in Acute Lung InjuryR01HL111674 · NHLBI · NATIONAL JEWISH HEALTH · PI FINIGAN, JAMES H · 2012 to 2016
$1.9M
NCI NIH HHS P50 CA058187NHLBI NIH HHS R01 HL111674NHLBI NIH HHS R01 HL118171
6 · The paper itself

Abstract

The discovery of mutant tyrosine kinases as oncogenic drivers of lung adenocarcinomas has changed the basic understanding of lung cancer development and therapy. Yet, expressed kinases (kinome) in lung cancer progenitor cells, as well as whether kinase expression and the overall kinome changes or is reprogrammed upon transformation, is incompletely understood. We hypothesized that the kinome differs between lung cancer progenitor cells, alveolar type II cells (ATII), and basal cells (BC) and that their respective kinomes undergo distinct lineage-specific reprogramming to adenocarcinomas and squamous cell carcinomas upon transformation. We performed RNA sequencing on freshly isolated human ATII, BC, and lung cancer cell lines to define the kinome in nontransformed cells and transformed cells. Our studies identified a unique kinome for ATII and BC and changes in their kinome upon transformation to their respective carcinomas.

Indexed as

Cell Transformation, NeoplasticAdenocarcinomaAdult Stem CellsAlveolar Epithelial CellsAnimalsCarcinoma, Squamous CellCell LineageCells, CulturedEnzyme InductionHumansLungLung NeoplasmsMiceNeoplasm ProteinsNeoplastic Stem CellsProtein-Tyrosine KinasesNeoplasm ProteinsProtein-Tyrosine KinasesRNA, MessengerRNA, Neoplasmalveolar type II cellsbasal cellskinomelung adenocarcinomalung squamous cell carcinoma

Identifiers

PMID30917006
PMCPMC6775950
OpenAlexW2923976106

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.