Evidence map›Paper›PMID 30926798›Full record

ArticleNature communications2019

A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease.

Cyrielle Caussy, Anupriya Tripathi, Greg Humphrey, Shirin Bassirian, Seema Singh, Claire Faulkner, Ricki Bettencourt, Emily Rizo, Lisa Richards, Zhenjiang Z Xu and 6 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 208 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
208citing papers in PubMed, 7 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

208 citing papers in PubMed, 7 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
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  4. Pooled it
  5. Pooled it
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  8. Trial
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  11. Oral Microbiome Characteristics in Patients With Autoimmune Hepatitis.Frontiers in cellular and infection microbiology · 2021
    Trial
  12. Trial
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  14. Article
  15. Article
  16. Review
  17. The Role of Gut Microbiota in Liver Regeneration After Partial Hepatectomy: New Evidence From Animal and Human Studies.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Review
  18. Review
  19. NovelGut · 2026
    Article
  20. Article

148 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Cyrielle CaussyNAFLD Research Center, Department of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Anupriya TripathiCenter for Microbiome Innovation, University of California San Diego, La Jolla, CA, 92093, USA.
Greg HumphreyDepartment of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA.
Shirin BassirianNAFLD Research Center, Department of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Seema SinghNAFLD Research Center, Department of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Claire FaulknerNAFLD Research Center, Department of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Ricki BettencourtNAFLD Research Center, Department of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Emily RizoNAFLD Research Center, Department of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Lisa RichardsNAFLD Research Center, Department of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Zhenjiang Z XuDepartment of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA.
Michael R DownesSalk Institute for Biological Studies, La Jolla, CA, 92037, USA.
Ronald M EvansSalk Institute for Biological Studies, La Jolla, CA, 92037, USA.
David A BrennerNAFLD Research Center, Department of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Claude B SirlinLiver Imaging Group, Department of Radiology, University of California at San Diego, La Jolla, CA, 92037, USA.
Rob KnightCenter for Microbiome Innovation, University of California San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0002-0975-9019
Rohit LoombaNAFLD Research Center, Department of Medicine, University of California San Diego, La Jolla, CA, 92093, USA. roloomba@ucsd.edu.

Funding

UC San Diego Clinical and Translational Research InstituteUL1TR001442 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FIRESTEIN, GARY S, HOGARTH, MICHAEL · 2015 to 2024
$88.3M
Yeast Genetics and Stress Response Genes-BiomedicalP42ES010337 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TUKEY, ROBERT H · 2000 to 2022
$69.8M
Transcriptional GenomicsP01HL088093 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLASS, CHRISTOPHER K · 2008 to 2018
$26.4M
HORMONAL REGULATION OF MAMMALIAN GENE EXPRESSIONR37DK057978 · NIDDK · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI EVANS, RONALD M · 2000 to 2019
$16.0M
Spatial Regulation of Developmental Gene ExpressionR01HL105278 · NHLBI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI EVANS, RONALD M · 2011 to 2019
$4.0M
GENETIC EPIDEMIOLOGY OF NONALCOHOLIC FATTY LIVER DISEASEK23DK090303 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LOOMBA, ROHIT · 2011 to 2014
$721k
NCATS NIH HHS UL1 TR001442NHLBI NIH HHS P01 HL088093NHLBI NIH HHS R01 HL105278NIDDK NIH HHS K23 DK090303NIDDK NIH HHS R37 DK057978NIEHS NIH HHS P42 ES010337
6 · The paper itself

Abstract

The presence of cirrhosis in nonalcoholic-fatty-liver-disease (NAFLD) is the most important predictor of liver-related mortality. Limited data exist concerning the diagnostic accuracy of gut-microbiome-derived signatures for detecting NAFLD-cirrhosis. Here we report 16S gut-microbiome compositions of 203 uniquely well-characterized participants from a prospective twin and family cohort, including 98 probands encompassing the entire spectrum of NAFLD and 105 of their first-degree relatives, assessed by advanced magnetic-resonance-imaging. We show strong familial correlation of gut-microbiome profiles, driven by shared housing. We report a panel of 30 features, including 27 bacterial features with discriminatory ability to detect NAFLD-cirrhosis using a Random Forest classifier model. In a derivation cohort of probands, the model has a robust diagnostic accuracy (AUROC of 0.92) for detecting NAFLD-cirrhosis, confirmed in a validation cohort of relatives of proband with NAFLD-cirrhosis (AUROC of 0.87). This study provides evidence for a fecal-microbiome-derived signature to detect NAFLD-cirrhosis.

Indexed as

Gastrointestinal MicrobiomeBacteriaFamilyFecesFemaleHumansLiver CirrhosisMaleNon-alcoholic Fatty Liver DiseaseROC Curve

Identifiers

PMID30926798
PMCPMC6440960

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.