Evidence map›Paper›PMID 30947685›Full record

ArticleBMC genomics2019

Comparative transcriptome analyses revealed different heat stress responses in high- and low-GS Brassica alboglabra sprouts.

Rongfang Guo, Xingru Wang, Xiaoyun Han, Wenjing Li, Tao Liu, Bingxing Chen, Xiaodong Chen, Gefu Wang-Pruski

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Development ofFrontiers in genetics · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Effect of Photoperiod on Chinese Kale (Frontiers in plant science · 2020
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Rongfang GuoJoint FAFU-Dalhousie Lab, College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Xingru WangJoint FAFU-Dalhousie Lab, College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Xiaoyun HanJoint FAFU-Dalhousie Lab, College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Wenjing LiJoint FAFU-Dalhousie Lab, College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Tao LiuJoint FAFU-Dalhousie Lab, College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Bingxing ChenCollege of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Xiaodong ChenCollege of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Gefu Wang-PruskiJoint FAFU-Dalhousie Lab, College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. Gefu.Wang-Pruski@Dal.Ca.ORCID http://orcid.org/0000-0002-2808-4803
Fujian Agriculture and Forestry University · CNDalhousie University · CA

Funding

Horticulture Postdoctoral Funding 132300155National Natural Science Foundation of China 31401859National Natural Science Foundation of China 31772310Outstanding Youth Training Program in Colleges and Universities of Fujian Province K8015060ASpecial Financial Grant No. 2017T100464
6 · The paper itself

Abstract

backgroundChinese kale (Brassica alboglabra) contains high nutritional elements and functional molecules, especially anticarcinogenic and antioxidant glucosinolates (GS), which was highly affected by environment temperature. To investigate the link of GS biosynthesis with heat stress response in Chinese kale, global transcription profiles of high-GS line (HG), low-GS line (LG), high-GS line under heat stress (HGT) and low-GS line under heat stress (LGT) were analyzed.

resultsBased on three biological replicates of each RNA sequencing data, 3901, 4062 and 2396 differentially expressed genes in HG vs HGT, LG vs LGT and HGT vs LGT were obtained, respectively. GO annotation, KEGG pathway analysis and a comprehensive analysis of DEGs showed a strong correlation between the GS biosynthesis and heat stress response. It was noticed that 11 differentially expressed genes tied to the GS biosynthesis were down-regulated, 23 heat shock transcription factors and 61 heat shock proteins were up-regulated upon the heat treatment. Another two Chinese kale varieties Cuibao and Shunbao with high- and low- GS content respectively, were used to validate the relationship of GS content and heat-response, and the results showed that high-GS content variety were more thermotolerant than the low-GS content one although GS significantly decreased in both varieties under heat stress. In addition, HSP100/ClpB, HSP90, HSP70 and sHSPs were differentially expressed in high- and low-GS varieties. Notably, HSP90 and sHSPs showed an obviously early response to heat stress than other related genes.

conclusionThe higher heat resistance of high-GS Chinese kale and the sharp decrease of glucosinolate content under heat stress indicated a strong relationship of GS accumulation and heat stress response. Combined with the previous report on the low expression of HSP90 at elevated temperatures in GS-deficient mutant TU8 of Arabidopsis, the differential expression pattern of HSP90 in high- and low- GS varieties and its early heat response implied it might be a key regulator in GS metabolism and heat-resistance in Chinese kale.

Indexed as

Gene Expression Regulation, PlantHeat-Shock ResponseTranscriptomeAntioxidantsBrassicaGene Expression ProfilingGlucosinolatesHeat-Shock ProteinsHigh-Throughput Nucleotide SequencingRNA, PlantSeedlingsAntioxidantsGlucosinolatesHeat-Shock ProteinsRNA, PlantBrassica alboglabraGlucosinolate biosynthesisHeat stressHSP90Transcriptome sequencing

Identifiers

PMID30947685
PMCPMC6450006
OpenAlexW2944147210

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.