Evidence map›Paper›PMID 31023833›Full record

ArticleLife science alliance2019

The impact of poly-A microsatellite heterologies in meiotic recombination.

Angelika Heissl, Andrea J Betancourt, Philipp Hermann, Gundula Povysil, Barbara Arbeithuber, Andreas Futschik, Thomas Ebner, Irene Tiemann-Boege

Abstract read
In one paragraph

Article in Life science alliance, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Angelika HeisslInstitute of Biophysics, Johannes Kepler University, Linz, Austria.
Andrea J BetancourtInsitute of Integrative Biology, University of Liverpool, Liverpool, UK.
Philipp HermannInstitute of Applied Statistics, Johannes Kepler University, Linz, Austria.ORCID 0000-0003-4556-6297
Gundula PovysilInstitute of Bioinformatics, Johannes Kepler University, Linz, Austria.
Barbara ArbeithuberInstitute of Biophysics, Johannes Kepler University, Linz, Austria.ORCID 0000-0001-8367-1560
Andreas FutschikInstitute of Applied Statistics, Johannes Kepler University, Linz, Austria.
Thomas EbnerDepartment of Gynecology, Obstetrics and Gynecological Endocrinology, Kepler University Clinic, Linz, Austria.
Irene Tiemann-BoegeInstitute of Biophysics, Johannes Kepler University, Linz, Austria Irene.tiemann@jku.at.ORCID 0000-0002-3621-7020

Funding

Austrian Science Fund FWF P 27698
6 · The paper itself

Abstract

Meiotic recombination has strong, but poorly understood effects on short tandem repeat (STR) instability. Here, we screened thousands of single recombinant products with sperm typing to characterize the role of polymorphic poly-A repeats at a human recombination hotspot in terms of hotspot activity and STR evolution. We show that the length asymmetry between heterozygous poly-A's strongly influences the recombination outcome: a heterology of 10 A's (9A/19A) reduces the number of crossovers and elevates the frequency of non-crossovers, complex recombination products, and long conversion tracts. Moreover, the length of the heterology also influences the STR transmission during meiotic repair with a strong and significant insertion bias for the short heterology (6A/7A) and a deletion bias for the long heterology (9A/19A). In spite of this opposing insertion-/deletion-biased gene conversion, we find that poly-A's are enriched at human recombination hotspots that could have important consequences in hotspot activation.

Indexed as

HeterozygoteAllelesCrossing Over, GeneticGene ConversionGenotypeHaplotypesHumansMaleMeiosisMicrosatellite InstabilityMicrosatellite RepeatsMutation RatePoly APolymorphism, Single NucleotideSpermatozoaTissue DonorsPoly A

Identifiers

PMID31023833
PMCPMC6485458

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.