Evidence map›Paper›PMID 31033441›Full record

ArticleeLife2019

Transcriptomic and epigenetic regulation of hair cell regeneration in the mouse utricle and its potentiation by Atoh1.

Hsin-I Jen, Matthew C Hill, Litao Tao, Kuanwei Sheng, Wenjian Cao, Hongyuan Zhang, Haoze V Yu, Juan Llamas, Chenghang Zong, James F Martin and 2 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Article
  3. A regulatory axis for tonotopic MYO7A expression in cochlear hair cells.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. The Genomics of Auditory Function and Disease.Annual review of genomics and human genetics · 2022
    Review
  13. Three distinctProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Article
  15. The regenerative capacity of neonatal tissues.Development (Cambridge, England) · 2022
    Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Hsin-I JenProgram in Developmental Biology, Baylor College of Medicine, Houston, United States.
Matthew C HillProgram in Developmental Biology, Baylor College of Medicine, Houston, United States.
Litao TaoDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles, United States.
Kuanwei ShengProgram in Integrative Molecular and Biomedical Sciences, Baylor College of Medicine, Houston, United States.
Wenjian CaoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, United States.
Hongyuan ZhangDepartment of Neuroscience, Baylor College of Medicine, Houston, United States.
Haoze V YuDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles, United States.
Juan LlamasDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles, United States.
Chenghang ZongDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, United States.
James F MartinProgram in Developmental Biology, Baylor College of Medicine, Houston, United States.
Neil SegilDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles, United States.
Andrew K GrovesProgram in Developmental Biology, Baylor College of Medicine, Houston, United States.ORCID 0000-0002-0784-7998
Baylor College of Medicine · USUniversity of Southern California · USHouston Methodist · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Michael M Ittmann · 2007 to 2026
$73.9M
Enhancing Atoh1 function in hair cell regenerationR01DC014832 · NIDCD · WASHINGTON UNIVERSITY · PI Gabriel Corfas, Andrew K Groves · 2016 to 2026
$6.7M
Pitx2 in atrial fibrillationR01HL118761 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI MARTIN, JAMES F · 2014 to 2025
$6.1M
Training in Hearing & Communication NeuroscienceT32DC009975 · NIDCD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Christopher A Shera · 2009 to 2026
$5.0M
Hippo and Wnt Signaling in Cardiac RegenerationR01HL127717 · NHLBI · TEXAS HEART INSTITUTE · PI MARTIN, JAMES F · 2016 to 2023
$4.4M
Optical elastography for assessment of myocardial regenerationR01HL130804 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI LARIN, KIRILL V, MARTIN, JAMES F · 2016 to 2019
$2.9M
MicroRNAs in cleft lip and palateR01DE023177 · NIDCR · BAYLOR COLLEGE OF MEDICINE · PI MARTIN, JAMES F · 2013 to 2017
$2.8M
Epigenetic mechanisms underlying the failure of hair cell regeneration in mammalsR01DC015829 · NIDCD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MCMAHON, ANDREW P., OGHALAI, JOHN S · 2018 to 2022
$2.8M
Detecting the onset of genome heterogeneity in tumor at single cell resolutionDP2EB020399 · NIBIB · BAYLOR COLLEGE OF MEDICINE · PI ZONG, CHENGHANG · 2014 to 2014
$2.4M
The transcriptional landscapes and cell states of regenerative cardiomyocytesF31HL136065 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI HILL, MATTHEW CRAIG · 2017 to 2019
$134k
NCI NIH HHS CA125123NCI NIH HHS P30 CA125123NHLBI NIH HHS F31 HL136065NHLBI NIH HHS F31HL136065NHLBI NIH HHS R01 HL118761NHLBI NIH HHS R01 HL127717NHLBI NIH HHS R01 HL130804NHLBI NIH HHS RO1HL118761NHLBI NIH HHS RO1HL127717NHLBI NIH HHS RO1HL130804NIBIB NIH HHS DP2 EB020399NIDCD NIH HHS R01 DC014832NIDCD NIH HHS R01 DC015829NIDCD NIH HHS RO1DC014832NIDCD NIH HHS RO1DC015829NIDCD NIH HHS T32 DC009975NIDCR NIH HHS R01 DE023177NIH HHS DP2EB020399
6 · The paper itself

Abstract

The mammalian cochlea loses its ability to regenerate new hair cells prior to the onset of hearing. In contrast, the adult vestibular system can produce new hair cells in response to damage, or by reprogramming of supporting cells with the hair cell transcription factor Atoh1. We used RNA-seq and ATAC-seq to probe the transcriptional and epigenetic responses of utricle supporting cells to damage and Atoh1 transduction. We show that the regenerative response of the utricle correlates with a more accessible chromatin structure in utricle supporting cells compared to their cochlear counterparts. We also provide evidence that Atoh1 transduction of supporting cells is able to promote increased transcriptional accessibility of some hair cell genes. Our study offers a possible explanation for regenerative differences between sensory organs of the inner ear, but shows that additional factors to Atoh1 may be required for optimal reprogramming of hair cell fate.

Indexed as

Epigenesis, GeneticGene Expression RegulationTranscriptomeAnimalsBasic Helix-Loop-Helix ProteinsCell CycleCell DeathCochleaFemaleHair Cells, AuditoryMaleMiceRegenerationSaccule and UtricleTranscription FactorsTransduction, GeneticAtoh1 protein, mouseBasic Helix-Loop-Helix ProteinsTranscription Factorscochleadevelopmental biologyhair cellmouseneuroscienceregenerationRNA-seqvestibular

Identifiers

PMID31033441
PMCPMC6504235
OpenAlexW2943355063

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.