Evidence map›Paper›PMID 31049400›Full record

ArticleScience advances2019

p63 establishes epithelial enhancers at critical craniofacial development genes.

Enrique Lin-Shiao, Yemin Lan, Julia Welzenbach, Katherine A Alexander, Zhen Zhang, Michael Knapp, Elisabeth Mangold, Morgan Sammons, Kerstin U Ludwig, Shelley L Berger

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
  2. Deletion of p63 exon 13 in mice reveals C-terminal isoform-specific functions in epithelial development.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
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  8. Functional analysis ofbioRxiv : the preprint server for biology · 2024
    Article
  9. Context dependent activity of p63-bound gene regulatory elements.bioRxiv : the preprint server for biology · 2024
    Article
  10. Article
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  14. Review
  15. Article
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  18. Article
  19. ACell genomics · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Enrique Lin-ShiaoDepartments of Cell and Developmental Biology and Epigenetics Institute, Philadelphia, PA 19104, USA.ORCID 0000-0001-5396-9614
Yemin LanDepartments of Cell and Developmental Biology and Epigenetics Institute, Philadelphia, PA 19104, USA.
Julia WelzenbachInstitute of Human Genetics, University Bonn, School of Medicine and University Hospital Bonn, Bonn, Germany.ORCID 0000-0002-9290-7173
Katherine A AlexanderDepartments of Cell and Developmental Biology and Epigenetics Institute, Philadelphia, PA 19104, USA.
Zhen ZhangDepartments of Cell and Developmental Biology and Epigenetics Institute, Philadelphia, PA 19104, USA.
Michael KnappInstitute of Medical Biometry, Informatics and Epidemiology, University of Bonn, Bonn, Germany.
Elisabeth MangoldInstitute of Human Genetics, University Bonn, School of Medicine and University Hospital Bonn, Bonn, Germany.ORCID 0000-0002-3819-2576
Morgan SammonsDepartments of Cell and Developmental Biology and Epigenetics Institute, Philadelphia, PA 19104, USA.ORCID 0000-0002-5329-1169
Kerstin U LudwigInstitute of Human Genetics, University Bonn, School of Medicine and University Hospital Bonn, Bonn, Germany.ORCID 0000-0002-8541-2519
Shelley L BergerDepartments of Cell and Developmental Biology and Epigenetics Institute, Philadelphia, PA 19104, USA.ORCID 0000-0001-5398-4400
Epigénétique et Destin Cellulaire · FRUniversity Hospital Bonn · DEUniversity of Bonn · DE

Funding

Role of PCAF/GCN5 Acetylation on p53 TransactivationR01CA078831 · NCI · WISTAR INSTITUTE · PI BERGER, SHELLEY L · 1999 to 2022
$7.8M
Molecular mechanisms regulating the establishment of cis-regulatory elements by the transcription factor p63R15GM128049 · NIGMS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI SAMMONS, MORGAN ANDREW · 2018 to 2018
$450k
Modulation of wild type and mutant p53 by HMGA1F32CA221010 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ALEXANDER, KATHERINE ANN · 2018 to 2020
$188k
The role of p53 family members in epithelial lineage establishment and maintenanceF31GM123744 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI LIN SHIAO, ENRIQUE · 2017 to 2018
$89k
NCI NIH HHS F32 CA221010NCI NIH HHS R01 CA078831NIGMS NIH HHS F31 GM123744NIGMS NIH HHS R15 GM128049
6 · The paper itself

Abstract

The transcription factor p63 is a key mediator of epidermal development. Point mutations in p63 in patients lead to developmental defects, including orofacial clefting. To date, knowledge on how pivotal the role of p63 is in human craniofacial development is limited. Using an inducible transdifferentiation model, combined with epigenomic sequencing and multicohort meta-analysis of genome-wide association studies data, we show that p63 establishes enhancers at craniofacial development genes to modulate their transcription. Disease-specific substitution mutation in the DNA binding domain or sterile alpha motif protein interaction domain of p63, respectively, eliminates or reduces establishment of these enhancers. We show that enhancers established by p63 are highly enriched for single-nucleotide polymorphisms associated with nonsyndromic cleft lip ± cleft palate (CL/P). These orthogonal approaches indicate a strong molecular link between p63 enhancer function and CL/P, illuminating molecular mechanisms underlying this developmental defect and revealing vital regulatory elements and new candidate causative genes.

Indexed as

BrainCleft LipCleft PalateEnhancer Elements, GeneticEpithelial CellsFacial BonesFibroblastsForeskinGenome-Wide Association StudyHEK293 CellsHumansKruppel-Like Factor 4Kruppel-Like Transcription FactorsMalePoint MutationPolymorphism, Single NucleotideKruppel-Like Factor 4Kruppel-Like Transcription FactorsTP63 protein, humanTranscription FactorsTumor Suppressor Proteins

Identifiers

PMID31049400
PMCPMC6494499
OpenAlexW2942939852

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.