Evidence map›Paper›PMID 31050737›Full record

ArticleThe Journal of infectious diseases2019

Multiple-Strain Infections of Human Cytomegalovirus With High Genomic Diversity Are Common in Breast Milk From Human Immunodeficiency Virus-Infected Women in Zambia.

Nicolás M Suárez, Kunda G Musonda, Eric Escriva, Margaret Njenga, Anthony Agbueze, Salvatore Camiolo, Andrew J Davison, Ursula A Gompels

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
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  5. Review
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  9. Review
  10. Viruses and Human Milk: Transmission or Protection?Advances in nutrition (Bethesda, Md.) · 2023
    Review
  11. Genomic and geographical structure of human cytomegalovirus.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Nicolás M SuárezMedical Research Council-University of Glasgow Centre for Virus Research, United Kingdom.
Kunda G MusondaPathogen Molecular Biology Department, London School of Hygiene and Tropical Medicine, United Kingdom.
Eric EscrivaPathogen Molecular Biology Department, London School of Hygiene and Tropical Medicine, United Kingdom.
Margaret NjengaPathogen Molecular Biology Department, London School of Hygiene and Tropical Medicine, United Kingdom.
Anthony AgbuezePathogen Molecular Biology Department, London School of Hygiene and Tropical Medicine, United Kingdom.
Salvatore CamioloMedical Research Council-University of Glasgow Centre for Virus Research, United Kingdom.
Andrew J DavisonMedical Research Council-University of Glasgow Centre for Virus Research, United Kingdom.
Ursula A GompelsPathogen Molecular Biology Department, London School of Hygiene and Tropical Medicine, United Kingdom.

Funding

Medical Research Council MC_UU_12014/12Medical Research Council MC_UU_12014/3Wellcome TrustWellcome Trust 204870/Z/16/Z
6 · The paper itself

Abstract

backgroundIn developed countries, human cytomegalovirus (HCMV) is a major pathogen in congenitally infected and immunocompromised individuals, where multiple-strain infection appears linked to disease severity. The situation is less documented in developing countries. In Zambia, breast milk is a key route for transmitting HCMV and carries higher viral loads in human immunodeficiency virus (HIV)-infected women. We investigated HCMV strain diversity.

methodsHigh-throughput sequence datasets were generated from 28 HCMV-positive breast milk samples donated by 22 mothers (15 HIV-infected and 7 HIV-negative) at 4-16 weeks postpartum, then analyzed by genome assembly and novel motif-based genotyping in 12 hypervariable HCMV genes.

resultsAmong the 20 samples from 14 donors (13 HIV-infected and one HIV-negative) who yielded data meeting quality thresholds, 89 of the possible 109 genotypes were detected, and multiple-strain infections involving up to 5 strains per person were apparent in 9 HIV-infected women. Strain diversity was extensive among individuals but conserved compartmentally and longitudinally within them. Genotypic linkage was maintained within hypervariable UL73/UL74 and RL12/RL13/UL1 loci for virus entry and immunomodulation, but not between genes more distant from each other.

conclusionsBreast milk from HIV-infected women contains multiple HCMV strains of high genotypic complexity and thus constitutes a major source for transmitting viral diversity.

Indexed as

Genetic VariationComputational BiologyCytomegalovirusCytomegalovirus InfectionsDNA, ViralFemaleGenes, ViralGenome, ViralGenotypeHigh-Throughput Screening AssaysHIV InfectionsHumansMilk, HumanViral LoadZambiaDNA, Viralbioinformaticsbreast milkhigh-throughput sequencinghuman cytomegalovirustarget enrichmentviral genomics

Identifiers

PMID31050737
PMCPMC6667993

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.