Evidence map›Paper›PMID 31139867›Full record

ReviewThe Journal of membrane biology2019

The Structural and Functional Diversity of Intrinsically Disordered Regions in Transmembrane Proteins.

Rajeswari Appadurai, Vladimir N Uversky, Anand Srivastava

Open access · greenAbstract readReview
In one paragraph

Review in The Journal of membrane biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. FXYD proteins and sodium pump regulatory mechanisms.The Journal of general physiology · 2021
    Review
  11. Article
  12. Special Issue: Membrane and Receptor Dynamics.The Journal of membrane biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 3 countries.

Rajeswari AppaduraiMolecular Biophysics Unit, Biological Sciences Division, Indian Institute of Science, Bangalore, Karnataka, 560012, India.
Vladimir N UverskyDepartment of Molecular Medicine and Byrd Alzheimer's Research Institute, Morsani College of Medicine, University of South Florida, Tampa, FL, 33612, USA.
Anand SrivastavaMolecular Biophysics Unit, Biological Sciences Division, Indian Institute of Science, Bangalore, Karnataka, 560012, India. anand@iisc.ac.in.ORCID 0000-0002-2757-1511
Indian Institute of Science Bangalore · INUniversity of South Florida · US

Funding

DBT-Wellcome Trust India Alliance IA/E/18/1/504308Science and Engineering Research Board DSTO/BMB/ASRI/1711Science and Engineering Research Board DSTO/BMB/ASRI/1809
6 · The paper itself

Abstract

The intrinsically disordered proteins and protein regions (IDPs/IDPRs) do not have unique structures, but are known to be functionally important and their conformational flexibility and structural plasticity have engendered a paradigmatic shift in the classical sequence-structure-function maxim. Fundamental understanding in this field has significantly evolved since the discovery of this class of proteins about 25 years ago. Though the IDPRs of transmembrane proteins (TMP-IDPRs) comply with the broad definition of typical IDPs and IDPRs found in water-soluble globular proteins, much less is explored and known about them. In this review, we assimilate the key emerging biophysical principles from the limited studies on TMP-IDPRs and provide several context-specific biological examples to highlight the ubiquitous nature of TMP-IDPRs and their functional importance in cellular functions. Besides providing a spectrum of insights from sequence to structural disorder and functions, we also review the challenges and methodological advances in studying the structure-function relationship of TMP-IDPRs. We also lay stress upon the importance of an integrative framework, where ensemble-averaged (and mostly low-resolution) data from multiple experiments can be faithfully integrated with modelling techniques such as advanced sampling, coarse-graining, and free energy minimization methods for a high-fidelity characterization of TMP-IDPRs. We close the review by providing futuristic perspective with suggestions on how we could use the ideas and methods from the exciting field of protein engineering in conjunction with integrative modelling framework to advance the IDPR field and harness the sequence-disorder-function paradigm towards functional design of proteins.

Indexed as

Intrinsically Disordered ProteinsMembrane ProteinsAnimalsHumansStructure-Activity RelationshipIntrinsically Disordered ProteinsMembrane ProteinsIntegrative modellingIntrinsically disordered regionsProtein designTransmembrane proteins

Identifiers

PMID31139867
PMCPMC7617717
OpenAlexW2947419771

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.