Evidence map›Paper›PMID 31145102›Full record

ArticleThe Journal of clinical investigation2019

CD161 contributes to prenatal immune suppression of IFNγ-producing PLZF+ T cells.

Joanna Halkias, Elze Rackaityte, Sara L Hillman, Dvir Aran, Ventura F Mendoza, Lucy R Marshall, Tippi C MacKenzie, Trevor D Burt

Abstract read
In one paragraph

Article in The Journal of clinical investigation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 72 citations in OpenAlex.

  1. Review
  2. Immune development in early life.Nature immunology · 2026
    Review
  3. Article
  4. Review
  5. Article
  6. Evidence for Maternal Autoantibodies in the Pathogenesis of Preterm Birth.medRxiv : the preprint server for health sciences · 2025
    Article
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  9. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Joanna HalkiasDivision of Neonatology, Department of Pediatrics, and.
Elze RackaityteBiomedical Sciences Program, UCSF, San Francisco, California, USA.
Sara L HillmanMaternal and Fetal Medicine Department, Institute for Women's Health, University College London, London, United Kingdom.
Dvir AranInstitute for Computational Health Sciences, UCSF, San Francisco, California, USA.
Ventura F MendozaEli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, UCSF, San Francisco, California, USA.
Lucy R MarshallDivision of Infection Immunity and Inflammation, University College London Great Ormond Street Institute of Child Health, London, United Kingdom.
Tippi C MacKenzieEli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, UCSF, San Francisco, California, USA.
Trevor D BurtDivision of Neonatology, Department of Pediatrics, and.
Pediatrics and Genetics · USUniversity of California, San Francisco · USBroad Center · USInstitute for Reproductive Health · USInstitute of Infection and Immunity · CA

Funding

Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GERMAN, MICHAEL S · 2003 to 2019
$21.8M
Child Health Career Development Program at UCSFK12HD072222 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIERO, DONNA M. · 2013 to 2017
$2.0M
Intrauterine sex steroids and human fetal T cell developmentK08AI128007 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HALKIAS, JOANNA · 2017 to 2021
$1.1M
BD FACSAria Fusion Cell SorterS10OD021822 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LEE, MICHAEL R. · 2016 to 2016
$573k
Determining the impact of in utero microbial colonization on immune tolerance developmentF31AI136336 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RACKAITYTE, ELZE · 2018 to 2020
$114k
NIAID NIH HHS F31 AI136336NIAID NIH HHS K08 AI128007NICHD NIH HHS K12 HD072222NIDDK NIH HHS P30 DK063720NIH HHS S10 OD021822
6 · The paper itself

Abstract

backgroundWhile the human fetal immune system defaults to a program of tolerance, there is concurrent need for protective immunity to meet the antigenic challenges encountered after birth. Activation of T cells in utero is associated with the fetal inflammatory response with broad implications for the health of the fetus and of the pregnancy. However, the characteristics of the fetal effector T cells that contribute to this process are largely unknown.

methodsWe analyzed primary human fetal lymphoid and mucosal tissues and performed phenotypic, functional, and transcriptional analysis to identify T cells with pro-inflammatory potential. The frequency and function of fetal-specific effector T cells was assessed in the cord blood of infants with localized and systemic inflammatory pathologies and compared to healthy term controls.

resultsWe identified a transcriptionally distinct population of CD4+ T cells characterized by expression of the transcription factor Promyelocytic Leukemia Zinc Finger (PLZF). PLZF+ CD4+ T cells were specifically enriched in the fetal intestine, possessed an effector memory phenotype, and rapidly produced pro-inflammatory cytokines. Engagement of the C-type lectin CD161 on these cells inhibited TCR-dependent production of IFNγ in a fetal-specific manner. IFNγ-producing PLZF+ CD4+ T cells were enriched in the cord blood of infants with gastroschisis, a natural model of chronic inflammation originating from the intestine, as well as in preterm birth, suggesting these cells contribute to fetal systemic immune activation.

conclusionOur work reveals a fetal-specific program of protective immunity whose dysregulation is associated with fetal and neonatal inflammatory pathologies.

Indexed as

Gene Expression Regulation, DevelopmentalImmune SystemCase-Control StudiesCD4-Positive T-LymphocytesFemaleFetal BloodFetusGene Expression RegulationHumansImmunologic MemoryImmunosuppression TherapyInfant, NewbornInflammationInterferon-gammaIntestinesLeukocytes, MononuclearIFNG protein, humanInterferon-gammaKLRB1 protein, humanNK Cell Lectin-Like Receptor Subfamily BPromyelocytic Leukemia Zinc Finger ProteinZBTB16 protein, humanDevelopmentImmunologyT cell development

Identifiers

PMID31145102
PMCPMC6715406
OpenAlexW2947937089

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.