Evidence map›Paper›PMID 31189701›Full record

ArticleJournal of virology2019

Allosteric Regulation of HIV-1 Capsid Structure for Gag Assembly, Virion Production, and Viral Infectivity by a Disordered Interdomain Linker.

Takaaki Koma, Osamu Kotani, Kei Miyakawa, Akihide Ryo, Masaru Yokoyama, Naoya Doi, Akio Adachi, Hironori Sato, Masako Nomaguchi

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 18 citations in OpenAlex.

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  9. Viruses · 2022
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  10. Review
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  14. Article
  15. Identification of a Novel Cis-Acting Regulator of HIV-1 Genome Packaging.International journal of molecular sciences · 2021
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Takaaki Koma *Department of Microbiology, Tokushima University Graduate School of Medical Science, Tokushima, Tokushima, Japan.
Osamu Kotani *Laboratory of Viral Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases, Musashimurayama, Tokyo, Japan.
Kei MiyakawaDepartment of Microbiology, Yokohama City University School of Medicine, Yokohama, Kanagawa, Japan.
Akihide RyoDepartment of Microbiology, Yokohama City University School of Medicine, Yokohama, Kanagawa, Japan.
Masaru YokoyamaLaboratory of Viral Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases, Musashimurayama, Tokyo, Japan.
Naoya DoiDepartment of Microbiology, Tokushima University Graduate School of Medical Science, Tokushima, Tokushima, Japan.
Akio AdachiDepartment of Microbiology, Kansai Medical University, Hirakata, Osaka, Japan.
Hironori SatoLaboratory of Viral Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases, Musashimurayama, Tokyo, Japan hirosato@nih.go.jp nomaguchi@tokushima-u.ac.jp.
Masako NomaguchiDepartment of Microbiology, Tokushima University Graduate School of Medical Science, Tokushima, Tokushima, Japan hirosato@nih.go.jp nomaguchi@tokushima-u.ac.jp.
National Institute of Infectious Diseases · JPTokushima University · JPYokohama City University · JPKansai Medical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The retroviral Gag capsid (Gag-CA) interdomain linker is an unstructured peptide segment connecting structured N-terminal and C-terminal domains. Although the region is reported to play roles in virion morphogenesis and infectivity, underlying molecular mechanisms remain unexplored. To address this issue, we determined biological and molecular phenotypes of HIV-1 CA linker mutants by experimental and

Indexed as

MutationAllosteric RegulationCapsidComputer Simulationgag Gene Products, Human Immunodeficiency VirusHeLa CellsHIV-1HumansModels, MolecularMolecular Dynamics SimulationProtein ConformationProtein DomainsVirus Assemblygag Gene Products, Human Immunodeficiency VirusassemblyGag-CAHIV-1interdomain linkervirus particle production

Identifiers

PMID31189701
PMCPMC6694816
OpenAlexW2951108920

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.