Evidence map›Paper›PMID 31251759›Full record

ArticlePloS one2019

GWAS of QRS duration identifies new loci specific to Hispanic/Latino populations.

Brenton R Swenson, Tin Louie, Henry J Lin, Raúl Méndez-Giráldez, Jennifer E Below, Cathy C Laurie, Kathleen F Kerr, Heather Highland, Timothy A Thornton, Kelli K Ryckman and 20 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  7. Genetic Factors Underlying Sudden Infant Death Syndrome.The application of clinical genetics · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 13 institutions in 1 country.

Brenton R SwensonInstitute for Public Health Genetics, University of Washington, Seattle, WA, United States of America.ORCID 0000-0002-4176-8273
Tin LouieDepartment of Biostatistics, University of Washington, Seattle, WA, United States of America.
Henry J LinThe Institute for Translational Genomics and Population Sciences, and Department of Pediatrics, Los Angeles Biomedical Research Institute, Harbor-UCLA Medical Center, Torrance, CA, United States of America.
Raúl Méndez-GiráldezLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, United States of America.ORCID 0000-0003-1853-9429
Jennifer E BelowDepartment of Medical Genetics, Vanderbilt University Medical Center, Nashville, TN, United States of America.
Cathy C LaurieDepartment of Biostatistics, University of Washington, Seattle, WA, United States of America.
Kathleen F KerrDepartment of Biostatistics, University of Washington, Seattle, WA, United States of America.
Heather HighlandDepartment of Epidemiology, University of North Carolina, Chapel Hill, NC, United States of America.
Timothy A ThorntonDepartment of Biostatistics, University of Washington, Seattle, WA, United States of America.
Kelli K RyckmanDepartments of Epidemiology and Pediatrics, University of Iowa, Iowa City, IA, United States of America.
Charles KooperbergDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, United States of America.
Elsayed Z SolimanDepartment of Internal Medicine, Section on Cardiology, Wake Forest School of Medicine, Winston-Salem, NC, United States of America.
Amanda A SeyerleDivision of Pharmaceutical Outcomes and Policy, Eshelman School of Pharmacy, University of North Carolina, Chapel Hill, NC, United States of America.
Xiuqing GuoThe Institute for Translational Genomics and Population Sciences, and Department of Pediatrics, Los Angeles Biomedical Research Institute, Harbor-UCLA Medical Center, Torrance, CA, United States of America.
Kent D TaylorThe Institute for Translational Genomics and Population Sciences, and Department of Pediatrics, Los Angeles Biomedical Research Institute, Harbor-UCLA Medical Center, Torrance, CA, United States of America.
Jie YaoThe Institute for Translational Genomics and Population Sciences, and Department of Pediatrics, Los Angeles Biomedical Research Institute, Harbor-UCLA Medical Center, Torrance, CA, United States of America.
Susan R HeckbertCardiovascular Health Research Unit, University of Washington, Seattle, WA, United States of America.
Dawood DarbarDivision of Cardiology, University of Illinois at Chicago, Chicago, IL, United States of America.
Lauren E PettyDepartment of Medical Genetics, Vanderbilt University Medical Center, Nashville, TN, United States of America.
Barbara McKnightCardiovascular Health Research Unit, University of Washington, Seattle, WA, United States of America.
Susan ChengSmidt Heart Institute, Cedars-Sinai Medical Center, Los Angeles, CA, United States of America.
Natalie A BelloBrigham and Women's Hospital, Division of Cardiovascular Medicine, Boston, MA, United States of America.
Eric A WhitselDepartment of Epidemiology, University of North Carolina, Chapel Hill, NC, United States of America.
Craig L HanisHuman Genetics Center, University of Texas, Health Science Center at Houston, Houston, TX, United States of America.
Mike A NallsData Technical International, Glen Echo, MD, United States of America.
Daniel S EvansCalifornia Pacific Medical Center Research Institute, San Francisco, CA, United States of America.
Jerome I RotterThe Institute for Translational Genomics and Population Sciences, and Department of Pediatrics, Los Angeles Biomedical Research Institute, Harbor-UCLA Medical Center, Torrance, CA, United States of America.
Tamar SoferDepartment of Medicine, Harvard Medical School, Boston, MA, United States of America.ORCID 0000-0001-8520-8860
Christy L AveryDepartment of Epidemiology, University of North Carolina, Chapel Hill, NC, United States of America.
Nona SotoodehniaCardiovascular Health Research Unit, University of Washington, Seattle, WA, United States of America.
University of Washington · USThe Lundquist Institute · USUniversity of North Carolina at Chapel Hill · USBrigham and Women's Hospital · USVanderbilt University Medical Center · USCalifornia Pacific Medical Center · USCedars-Sinai Medical Center · USFred Hutch Cancer Center · USNational Institute on Aging · USThe University of Texas Health Science Center at Houston · USUniversity of Illinois Chicago · USUniversity of Iowa · USWake Forest University · US

Funding

UCLA Clinical Translational Science InstituteUL1TR001881 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ARLEEN F. BROWN, ARASH NAEIM · 2016 to 2026
$118.1M
Institute for Clinical and Translational ResearchUL1TR001079 · NCATS · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2013 to 2017
$60.1M
UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MILES Frome WILKINSON · 2003 to 2026
$40.4M
Wake Forest Clinical and Translational Science AwardUL1TR001420 · NCATS · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI ARD, JAMY D, FOLEY, KRISTIE L · 2015 to 2023
$32.3M
Clinical and Translational Science AwardUL1TR000040 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2012 to 2015
$26.2M
TRANSGENIC COREP60DK020595 · NIDDK · UNIVERSITY OF CHICAGO · PI BELL, GRAEME I · 1985 to 2012
$25.5M
Pilot and Feasibility ProgramP30DK020595 · NIDDK · UNIVERSITY OF CHICAGO · PI GRAEME I BELL · 2013 to 2026
$20.9M
Cardiovascular Epidemiology Training GrantT32HL007055 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Wayne D. Rosamond · 1986 to 2026
$10.0M
Cardiovascular Disease Epidemiology &Prevention TrngT32HL007779 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI PAMELA L. Lutsey, JAMES S PANKOW · 1994 to 2026
$9.3M
Training Program in Cardiovascular ResearchT32HL007374 · NHLBI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MITTLEMAN, MURRAY A · 1985 to 2019
$7.9M
Hispanic Latino Lipid ConsortiumR01HL142302 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Jennifer Below, JOSEPH MCCORMICK · 2018 to 2026
$5.8M
NCATS NIH HHS UL1 TR000040NCATS NIH HHS UL1 TR000124NCATS NIH HHS UL1 TR001079NCATS NIH HHS UL1 TR001420NCATS NIH HHS UL1 TR001881NHGRI NIH HHS HHSN268200782096CNHLBI NIH HHS HHSN268201300005CNHLBI NIH HHS HHSN268201300024CNHLBI NIH HHS HHSN268201500003CNHLBI NIH HHS HHSN268201500003INHLBI NIH HHS HHSN268201600001CNHLBI NIH HHS HHSN268201600002CNHLBI NIH HHS HHSN268201600003CNHLBI NIH HHS HHSN268201600004CNHLBI NIH HHS HHSN268201600018CNHLBI NIH HHS K23 HL136853NHLBI NIH HHS N01 HC065233NHLBI NIH HHS N01 HC065234NHLBI NIH HHS N01 HC065235NHLBI NIH HHS N01 HC065236NHLBI NIH HHS N01 HC065237NHLBI NIH HHS N01 HC095159NHLBI NIH HHS N01 HC095160NHLBI NIH HHS N01 HC095161NHLBI NIH HHS N01 HC095162NHLBI NIH HHS N01 HC095163NHLBI NIH HHS N01 HC095164NHLBI NIH HHS N01 HC095165NHLBI NIH HHS N01 HC095166NHLBI NIH HHS N01 HC095167NHLBI NIH HHS N01 HC095168NHLBI NIH HHS N01 HC095169NHLBI NIH HHS N02 HL064278NHLBI NIH HHS R01 HL092217NHLBI NIH HHS R01 HL102830NHLBI NIH HHS R01 HL111089NHLBI NIH HHS R01 HL116747NHLBI NIH HHS R01 HL124935NHLBI NIH HHS R01 HL142302NHLBI NIH HHS T32 HL007055NHLBI NIH HHS T32 HL007374NHLBI NIH HHS T32 HL007779NHLBI NIH HHS T32 HL139439NIAID NIH HHS R01 AI085014NIDDK NIH HHS P30 DK020595NIDDK NIH HHS P30 DK063491NIDDK NIH HHS P60 DK020595NIDDK NIH HHS R01 DK073541NIDDK NIH HHS U01 DK085501NIH HHS S10 OD020069
6 · The paper itself

Abstract

backgroundThe electrocardiographically quantified QRS duration measures ventricular depolarization and conduction. QRS prolongation has been associated with poor heart failure prognosis and cardiovascular mortality, including sudden death. While previous genome-wide association studies (GWAS) have identified 32 QRS SNPs across 26 loci among European, African, and Asian-descent populations, the genetics of QRS among Hispanics/Latinos has not been previously explored.

methodsWe performed a GWAS of QRS duration among Hispanic/Latino ancestry populations (n = 15,124) from four studies using 1000 Genomes imputed genotype data (adjusted for age, sex, global ancestry, clinical and study-specific covariates). Study-specific results were combined using fixed-effects, inverse variance-weighted meta-analysis.

resultsWe identified six loci associated with QRS (P<5x10-8), including two novel loci: MYOCD, a nuclear protein expressed in the heart, and SYT1, an integral membrane protein. The top SNP in the MYOCD locus, intronic SNP rs16946539, was found in Hispanics/Latinos with a minor allele frequency (MAF) of 0.04, but is monomorphic in European and African descent populations. The most significant QRS duration association was with intronic SNP rs3922344 (P = 1.19x10-24) in SCN5A/SCN10A. Three other previously identified loci, CDKN1A, VTI1A, and HAND1, also exceeded the GWAS significance threshold among Hispanics/Latinos. A total of 27 of 32 previously identified QRS duration SNPs were shown to generalize in Hispanics/Latinos.

conclusionsOur QRS duration GWAS, the first in Hispanic/Latino populations, identified two new loci, underscoring the utility of extending large scale genomic studies to currently under-examined populations.

Indexed as

ElectrocardiographyGenetic LociGenome-Wide Association StudyHispanic or LatinoHumansMiddle AgedMolecular Sequence AnnotationPhenotypePolymorphism, Single Nucleotide

Identifiers

PMID31251759
PMCPMC6599128
OpenAlexW2954826423

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.