Evidence map›Paper›PMID 31270212›Full record

ArticleThe Journal of biological chemistry2019

Stable calcium-free myocilin olfactomedin domain variants reveal challenges in differentiating between benign and glaucoma-causing mutations.

Shannon E Hill, Michelle S Kwon, Mackenzie D Martin, Amirthaa Suntharalingam, Anthony Hazel, Chad A Dickey, James C Gumbart, Raquel L Lieberman

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Evidence for SbioRxiv : the preprint server for biology · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Myocilin misfolding and glaucoma: A 20-year update.Progress in retinal and eye research · 2023
    Review
  9. Article
  10. Article
  11. Calcium dysregulation potentiates wild-type myocilin misfolding: implications for glaucoma pathogenesis.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2022
    Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Shannon E HillSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332.
Michelle S KwonSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332.ORCID 0000-0003-4772-1553
Mackenzie D MartinSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332.
Amirthaa SuntharalingamDepartment of Molecular Medicine and Byrd Alzheimer's Research Institute, University of South Florida, Tampa, Florida 33613.
Anthony HazelSchool of Physics, Georgia Institute of Technology, Atlanta, Georgia 30332.
Chad A DickeyDepartment of Molecular Medicine and Byrd Alzheimer's Research Institute, University of South Florida, Tampa, Florida 33613.
James C GumbartSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332.ORCID 0000-0002-1510-7842
Raquel L LiebermanSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332 Raquel.lieberman@chemistry.gatech.edu.ORCID 0000-0001-9345-3735
Georgia Institute of Technology · USUniversity of South Florida · US

Funding

Request for Supplement to Promote Diversity in Health Related ResearchR01EY021205 · NEI · GEORGIA INSTITUTE OF TECHNOLOGY · PI Raquel L Lieberman · 2011 to 2026
$6.8M
Grp94-selective inhibitors to treat heredity glaucomaR01EY024232 · NEI · UNIVERSITY OF SOUTH FLORIDA · PI BLAGG, BRIAN S J, DESCHENES, ROBERT J · 2014 to 2017
$1.7M
Phase II SER-CAT Optimization: Acquisition of a next generation area detectorS10RR028976 · NCRR · UNIVERSITY OF GEORGIA · PI WANG, BI-CHENG · 2010 to 2010
$1.5M
Dynamic characterization of outer-membrane-protein biogenesis by the BAM and TAM complexesR01GM123169 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI GUMBART, JAMES C. · 2017 to 2021
$1.4M
Acquition of a microdiffractometer for SER-CATS10RR025528 · NCRR · UNIVERSITY OF GEORGIA · PI ROSE, JOHN PATRICK · 2009 to 2009
$414k
NCRR NIH HHS S10 RR025528NCRR NIH HHS S10 RR028976NEI NIH HHS R01 EY021205NEI NIH HHS R01 EY024232NIGMS NIH HHS R01 GM123169
6 · The paper itself

Abstract

Nonsynonymous gene mutations can be beneficial, neutral, or detrimental to the stability, structure, and biological function of the encoded protein, but the effects of these mutations are often not readily predictable. For example, the β-propeller olfactomedin domain of myocilin (mOLF) exhibits a complex interrelationship among structure(s), stability, and aggregation. Numerous mutations within mOLF are linked to glaucoma; the resulting variants are less stable, aggregation-prone, and sequestered intracellularly, causing cytotoxicity. Here, we report the first stable mOLF variants carrying substitutions in the calcium-binding site that exhibit solution characteristics indistinguishable from those of glaucoma variants. Crystal structures of these stable variants at 1.8-2.0-Å resolution revealed features that we could not predict by molecular dynamics simulations, including loss of loop structure, helix unwinding, and a blade shift. Double mutants that combined a stabilizing substitution and a selected glaucoma-causing single-point mutant rescued

Indexed as

MutationCytoskeletal ProteinsExtracellular Matrix ProteinsEye ProteinsGenetic VariationGlaucomaGlycoproteinsHEK293 CellsHumansMolecular Dynamics SimulationMyocilinCytoskeletal ProteinsExtracellular Matrix ProteinsEye ProteinsGlycoproteinsMyocilinolfactomedinextracellular matrix proteinglaucomamolecular dynamicsprotein aggregationprotein misfoldingprotein secretionprotein structureX-ray crystallography

Identifiers

PMID31270212
PMCPMC6709634
OpenAlexW2955742566

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.