Evidence map›Paper›PMID 31296872›Full record

ArticleNature communications2019

Pioneer and repressive functions of p63 during zebrafish embryonic ectoderm specification.

José M Santos-Pereira, Lourdes Gallardo-Fuentes, Ana Neto, Rafael D Acemel, Juan J Tena

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 60 citations in OpenAlex.

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  8. Context dependent activity of p63-bound gene regulatory elements.bioRxiv : the preprint server for biology · 2024
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  12. Essential role of PLD2 in hypoxia-induced stemness and therapy resistance in ovarian tumors.Journal of experimental & clinical cancer research : CR · 2024
    Article
  13. Review
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  20. UBA2 variants underlie a recognizable syndrome with variable aplasia cutis congenita and ectrodactyly.Genetics in medicine : official journal of the American College of Medical Genetics · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

José M Santos-PereiraCentro Andaluz de Biología del Desarrollo (CABD), Consejo Superior de Investigaciones Científicas/Universidad Pablo de Olavide, 41013, Seville, Spain.ORCID http://orcid.org/0000-0003-3949-0644
Lourdes Gallardo-FuentesCentro Andaluz de Biología del Desarrollo (CABD), Consejo Superior de Investigaciones Científicas/Universidad Pablo de Olavide, 41013, Seville, Spain.ORCID http://orcid.org/0000-0001-7615-7467
Ana NetoCentro Andaluz de Biología del Desarrollo (CABD), Consejo Superior de Investigaciones Científicas/Universidad Pablo de Olavide, 41013, Seville, Spain.
Rafael D AcemelCentro Andaluz de Biología del Desarrollo (CABD), Consejo Superior de Investigaciones Científicas/Universidad Pablo de Olavide, 41013, Seville, Spain.ORCID http://orcid.org/0000-0003-4120-0140
Juan J TenaCentro Andaluz de Biología del Desarrollo (CABD), Consejo Superior de Investigaciones Científicas/Universidad Pablo de Olavide, 41013, Seville, Spain. jjtenagu@upo.es.ORCID http://orcid.org/0000-0001-8165-7984
Consejo Superior de Investigaciones Científicas · ES

Funding

Ministerio de Economía y Competitividad (Ministry of Economy and Competitiveness) BFU2014-58449-JINMinisterio de Economía y Competitividad (Ministry of Economy and Competitiveness) IJCI-2016-29884
6 · The paper itself

Abstract

The transcription factor p63 is a master regulator of ectoderm development. Although previous studies show that p63 triggers epidermal differentiation in vitro, the roles of p63 in developing embryos remain poorly understood. Here, we use zebrafish embryos to analyze in vivo how p63 regulates gene expression during development. We generate tp63-knock-out mutants that recapitulate human phenotypes and show down-regulated epidermal gene expression. Following p63-binding dynamics, we find two distinct functions clearly separated in space and time. During early development, p63 binds enhancers associated to neural genes, limiting Sox3 binding and reducing neural gene expression. Indeed, we show that p63 and Sox3 are co-expressed in the neural plate border. On the other hand, p63 acts as a pioneer factor by binding non-accessible chromatin at epidermal enhancers, promoting their opening and epidermal gene expression in later developmental stages. Therefore, our results suggest that p63 regulates cell fate decisions during vertebrate ectoderm specification.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsAnimals, Genetically ModifiedCell DifferentiationChromatinCRISPR-Cas SystemsDown-RegulationEctodermEmbryonic DevelopmentEmbryo, NonmammalianEnhancer Elements, GeneticEpidermisGene Knockout TechniquesModels, AnimalNeural PlatePhosphoproteinsChromatinPhosphoproteinsSOXB1 Transcription FactorsTp63 protein, zebrafishTrans-ActivatorsZebrafish Proteins

Identifiers

PMID31296872
PMCPMC6624255
OpenAlexW2957824330

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.