Evidence map›Paper›PMID 31361600›Full record

ArticleThe Journal of clinical investigation2019

Molecular profiling stratifies diverse phenotypes of treatment-refractory metastatic castration-resistant prostate cancer.

Mark P Labrecque, Ilsa M Coleman, Lisha G Brown, Lawrence D True, Lori Kollath, Bryce Lakely, Holly M Nguyen, Yu C Yang, Rui M Gil da Costa, Arja Kaipainen and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 325 papers.

0numbers the graph read from it
0cells of the map it votes in
325citing papers in PubMed
29.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

325 citing papers in PubMed, 447 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article

265 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 1 country.

Mark P LabrecqueDepartment of Urology, University of Washington, Seattle, Washington, USA.
Ilsa M ColemanDivison of Human Biology and.
Lisha G BrownDepartment of Urology, University of Washington, Seattle, Washington, USA.
Lawrence D TrueDepartment of Pathology and.
Lori KollathDepartment of Urology, University of Washington, Seattle, Washington, USA.
Bryce LakelyDepartment of Urology, University of Washington, Seattle, Washington, USA.
Holly M NguyenDepartment of Urology, University of Washington, Seattle, Washington, USA.
Yu C YangDivison of Human Biology and.
Rui M Gil da CostaDivison of Human Biology and.
Arja KaipainenDivison of Human Biology and.
Roger ColemanDivison of Human Biology and.
Celestia S HiganoDepartment of Urology, University of Washington, Seattle, Washington, USA.
Evan Y YuDivison of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Heather H ChengDivison of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Elahe A MostaghelDepartment of Medicine, Division of Medical Oncology, University of Washington, Seattle, Washington, USA.
Bruce MontgomeryDepartment of Medicine, Division of Medical Oncology, University of Washington, Seattle, Washington, USA.
Michael T SchweizerDivison of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Andrew C HsiehDivison of Human Biology and.
Daniel W LinDepartment of Urology, University of Washington, Seattle, Washington, USA.
Eva CoreyDepartment of Urology, University of Washington, Seattle, Washington, USA.
Peter S NelsonDivison of Human Biology and.
Colm MorrisseyDepartment of Urology, University of Washington, Seattle, Washington, USA.
University of Washington · USFred Hutch Cancer Center · USUniversity of Washington Medical Center · USUniversity of Puget Sound · US

Funding

TRANSCRIPTOME AND PROTEOME STRATIFICATION OF PROSTATE ADENOCARCINOMA PHENOTYPESP50CA097186 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETER S NELSON · 2002 to 2026
$58.1M
Steroid Metabolism in Castration-Resistant Prostate CancerP01CA163227 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI PETER S NELSON · 2013 to 2026
$25.0M
Hormone signaling and translation control in advanced prostate cancerR37CA230617 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HSIEH, ANDREW CALEB · 2019 to 2025
$3.1M
FHCRC High-Performance Computing ClusterS10OD020069 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2015 to 2015
$600k
NCI NIH HHS P01 CA163227NCI NIH HHS P50 CA097186NCI NIH HHS R37 CA230617NIH HHS S10 OD020069
6 · The paper itself

Abstract

Metastatic castration-resistant prostate cancer (mCRPC) is a heterogeneous disease with diverse drivers of disease progression and mechanisms of therapeutic resistance. We conducted deep phenotypic characterization of CRPC metastases and patient-derived xenograft (PDX) lines using whole genome RNA sequencing, gene set enrichment analysis and immunohistochemistry. Our analyses revealed five mCRPC phenotypes based on the expression of well-characterized androgen receptor (AR) or neuroendocrine (NE) genes: (i) AR-high tumors (ARPC), (ii) AR-low tumors (ARLPC), (iii) amphicrine tumors composed of cells co-expressing AR and NE genes (AMPC), (iv) double-negative tumors (i.e. AR-/NE-; DNPC) and (v) tumors with small cell or NE gene expression without AR activity (SCNPC). RE1-silencing transcription factor (REST) activity, which suppresses NE gene expression, was lost in AMPC and SCNPC PDX models. However, knockdown of REST in cell lines revealed that attenuated REST activity drives the AMPC phenotype but is not sufficient for SCNPC conversion. We also identified a subtype of DNPC tumors with squamous differentiation and generated an encompassing 26-gene transcriptional signature that distinguished the five mCRPC phenotypes. Together, our data highlight the central role of AR and REST in classifying treatment-resistant mCRPC phenotypes. These molecular classifications could potentially guide future therapeutic studies and clinical trial design.

Indexed as

Gene Expression ProfilingGene Expression Regulation, NeoplasticNeoplasm ProteinsProstatic Neoplasms, Castration-ResistantTranscription, GeneticHumansMaleNeoplasm MetastasisPC-3 CellsNeoplasm ProteinsCell BiologyExpression profilingMolecular pathologyOncologyProstate cancer

Identifiers

PMID31361600
PMCPMC6763249
OpenAlexW2965156742

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.