Evidence map›Paper›PMID 31368590›Full record

ArticleThe EMBO journal2019

Nuclear RNA export factor variant initiates piRNA-guided co-transcriptional silencing.

Kensaku Murano, Yuka W Iwasaki, Hirotsugu Ishizu, Akane Mashiko, Aoi Shibuya, Shu Kondo, Shungo Adachi, Saori Suzuki, Kuniaki Saito, Tohru Natsume and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed, 1 pooled it
16.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 1 synthesis or guideline pooled it, 88 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Life science alliance · 2026
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. piRNA direct the chromatin reader to its genomic targets.bioRxiv : the preprint server for biology · 2026
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Kensaku MuranoDepartment of Molecular Biology, Keio University School of Medicine, Tokyo, Japan.
Yuka W IwasakiDepartment of Molecular Biology, Keio University School of Medicine, Tokyo, Japan.ORCID 0000-0002-2182-2076
Hirotsugu IshizuDepartment of Molecular Biology, Keio University School of Medicine, Tokyo, Japan.
Akane MashikoDepartment of Molecular Biology, Keio University School of Medicine, Tokyo, Japan.
Aoi ShibuyaDepartment of Molecular Biology, Keio University School of Medicine, Tokyo, Japan.
Shu KondoInvertebrate Genetics Laboratory, National Institute of Genetics, Mishima, Shizuoka, Japan.
Shungo AdachiMolecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.
Saori SuzukiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Kuniaki SaitoInvertebrate Genetics Laboratory, National Institute of Genetics, Mishima, Shizuoka, Japan.
Tohru NatsumeMolecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.
Mikiko C SiomiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.ORCID 0000-0002-6149-4396
Haruhiko SiomiDepartment of Molecular Biology, Keio University School of Medicine, Tokyo, Japan.ORCID 0000-0001-8690-3822
Keio University · JPNational Institute of Advanced Industrial Science and Technology · JPNational Institute of Genetics · JPThe University of Tokyo · JPYokohama National University · JP

Funding

Kato Memorial Bioscience FoundationMEXT|Japan Society for the Promotion of Science (JSPS) 15H05583MEXT|Japan Society for the Promotion of Science (JSPS) 17H05603MEXT|Japan Society for the Promotion of Science (JSPS) 17H05610MEXT|Japan Society for the Promotion of Science (JSPS) 17K08644MEXT|Japan Society for the Promotion of Science (JSPS) 18H02421MEXT|Japan Society for the Promotion of Science (JSPS) 19H05268MEXT|Japan Society for the Promotion of Science (JSPS) 25221003Naito FoundationNOVARTIS Foundation (Japan for the Promotion of Science (NOVARTIS Foundation (Japan))Senri Life Science FoundationTakeda Science Foundation
6 · The paper itself

Abstract

The PIWI-interacting RNA (piRNA) pathway preserves genomic integrity by repressing transposable elements (TEs) in animal germ cells. Among PIWI-clade proteins in Drosophila, Piwi transcriptionally silences its targets through interactions with cofactors, including Panoramix (Panx) and forms heterochromatin characterized by H3K9me3 and H1. Here, we identified Nxf2, a nuclear RNA export factor (NXF) variant, as a protein that forms complexes with Piwi, Panx, and p15. Panx-Nxf2-P15 complex formation is necessary in the silencing by stabilizing protein levels of Nxf2 and Panx. Notably, ectopic targeting of Nxf2 initiates co-transcriptional repression of the target reporter in a manner independent of H3K9me3 marks or H1. However, continuous silencing requires HP1a and H1. In addition, Nxf2 directly interacts with target TE transcripts in a Piwi-dependent manner. These findings suggest a model in which the Panx-Nxf2-P15 complex enforces the association of Piwi with target transcripts to trigger co-transcriptional repression, prior to heterochromatin formation in the nuclear piRNA pathway. Our results provide an unexpected connection between an NXF variant and small RNA-mediated co-transcriptional silencing.

Indexed as

Gene SilencingAnimalsArgonaute ProteinsDrosophila melanogasterDrosophila ProteinsFemaleGene Expression RegulationHistonesNuclear ProteinsNucleocytoplasmic Transport ProteinsRNA-Binding ProteinsRNA, Small InterferingTranscription, GeneticArgonaute ProteinsDrosophila ProteinsHistonesNuclear ProteinsNucleocytoplasmic Transport ProteinsNxt1 protein, Drosophilapanx protein, Drosophilapiwi protein, DrosophilaRNA-Binding ProteinsRNA, Small Interferingheterochromatin formationnuclear RNA export factorRNA silencingtranscriptional regulationtransposable element

Identifiers

PMID31368590
PMCPMC6717896
OpenAlexW2965439108

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.