ArticleBMC plant biology2019
RNA sequencing analysis of Cymbidium goeringii identifies floral scent biosynthesis related genes.
Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
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Who cites it
33 citing papers in PubMed.
- Expanded SSR profile database for forensic discrimination and phylogenetic analysis in cultivars of spring orchid (Cymbidium goeringii).Genes & genomics · 2026Article
- Multidimensional analysis of floral scent emission patterns in Phalaenopsis 'Chanel'.BMC plant biology · 2026Article
- Functional Characterization of Double-Bond Reductases in Dihydro-β-Ionone Biosynthesis inPlants (Basel, Switzerland) · 2025Article
- Effects of Light Quality on Flowering and Physiological Parameters ofPlants (Basel, Switzerland) · 2025Article
- Integrative omics reveals mechanisms of biosynthesis and regulation of floral scent in Cymbidium tracyanum.Plant biotechnology journal · 2025Article
- Metabolomic and transcriptomic analyses provide insight into the variation of floral scent and molecular regulation in different cultivars and flower development ofHorticulture research · 2025Article
- PfERF106, a novel key transcription factor regulating the biosynthesis of floral terpenoids in Primula forbesii Franch.BMC plant biology · 2024Article
- Characterization and identification of antimicrobial compounds from endophytic Fusarium incarnatum isolated from Cymbidium orchids.International microbiology : the official journal of the Spanish Society for Microbiology · 2024Article
- Article
- Molecular mechanisms underlying floral fragrance inFrontiers in plant science · 2024Article
- Comparative analysis of antimicrobial compounds from endophytic Buergenerula spartinae from orchid.Antonie van Leeuwenhoek · 2023Article
- Transcriptome Analyses Reveal the Aroma Terpeniods Biosynthesis Pathways ofInternational journal of molecular sciences · 2023Article
- Article
- Volatile Composition and Classification ofInternational journal of molecular sciences · 2023Article
- Integrative metabolome and transcriptome analyses reveal the molecular mechanism underlying variation in floral scent during flower development ofFrontiers in plant science · 2022Article
- Comprehensive Analysis of Endogenous Volatile Compounds, Transcriptome, and Enzyme Activity RevealsFrontiers in plant science · 2022Article
- A Walk Through the Maze of Secondary Metabolism in Orchids: A Transcriptomic Approach.Frontiers in plant science · 2022Review
- Orchid Phylotranscriptomics: The Prospects of Repurposing Multi-Tissue Transcriptomes for Phylogenetic Analysis and Beyond.Frontiers in plant science · 2022Article
- Terpenoids and their gene regulatory networks inFrontiers in plant science · 2022Article
- Transcriptome mining of hormonal and floral integrators in the leafless flowers of three cymbidium orchids.Frontiers in plant science · 2022Article
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10 authors.
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Abstract
backgroundCymbidium goeringii belongs to the Orchidaceae, which is one of the most abundant angiosperm families. Cymbidium goeringii consist with high economic value and characteristics include fragrance and multiple flower colors. Floral scent is one of the important strategies for ensuring fertilization. However, limited genetic data is available in this non-model plant, and little known about the molecular mechanism responsible for floral scent in this orchid. Transcriptome and expression profiling data are needed to identify genes and better understand the biological mechanisms of floral scents in this species. Present transcriptomic data provides basic information on the genes and enzymes related to and pathways involved in flower secondary metabolism in this plant.
resultsIn this study, RNA sequencing analyses were performed to identify changes in gene expression and biological pathways related scent metabolism. Three cDNA libraries were obtained from three developmental floral stages: closed bud, half flowering stage and full flowering stage. Using Illumina technique 159,616,374 clean reads were obtained and were assembled into 85,868 final unigenes (average length 1194 nt), 33.85% of which were annotated in the NCBI non redundant protein database. Among this unigenes 36,082 were assigned to gene ontology and 23,164 were combined with COG groups. Total 33,417 unigenes were assigned in 127 pathways according to the Kyoto Encyclopedia of Genes and Genomes pathway database. According these transcriptomic data we identified number of candidates genes which differentially expressed in different developmental stages of flower related to fragrance biosynthesis. In q-RT-PCR most of the fragrance related genes highly expressed in half flowering stage.
conclusionsRNA-seq and DEG data provided comprehensive gene expression information at the transcriptional level that could be facilitate the molecular mechanisms of floral biosynthesis pathways in three developmental phase's flowers in Cymbidium goeringii, moreover providing useful information for further analysis on C. goeringii, and other plants of genus Cymbidium.
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